| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2179 |
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| Symbol | |
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| ID | 3967563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2772235 |
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| End bp | 2773962 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637921269 |
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| Product | flagellar basal-body rod protein FlgC |
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| Protein accession | YP_527651 |
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| Protein GI | 90021824 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATGTAG AACAGCACGC ACTAAAGGTT TTAATAGCTG AAGACTCGGC GCCAGATAGG
CTTATTCTGG CAACTATAGT TTCTAATGCT GGCCACATAG CCATACCCGT TACAGACGGT
GTAGAAGCAG TAACAGCGTT TAAAGCCGAA AGGCCAGATA TTATTTTAAT GGATGTGCTC
ATGCCCAATA TGGGGGGCGT AGAGGCAGCC AAGAAAATTC GAGAAATAGC TCGCGACGAA
TTAGTGCCCA TCTTATTTCT AACTTCTCTC TCAGATACAG ATTCGCTCGT GGAATGTTTG
GAAGCCGGCG GGGATGACTT TGTATCCAAG CCTTATAATC GCGTTGTACT TCAATCTAAA
ATTAAAGCGT TTGGCCGTAT GCGAGAAATG CATACGACGG TGGCAAAACA GCGTGATGAA
ATTGAACGTC ACCACAATCA TTTAATTCAA GAGCAGCGAG TAGCCAAACA AGTATTCGAC
AAAATTGCCC ATTCTGGGTG TTTAGATTTA AGCAATATTC GTTACTCCAT GTCCCCATTG
GCGGTATTTA ATGGCGATGT ATTAGTTGCC GAAGTGAGCC CCAGTGGCAA TATGATTATC
TTGCTGGGTG ACTTTACGGG CCACGGTTTA CCTGCTGCGG TGGGGTCTAT CCCTTTAGCT
ACCACCTTCT ATGGCATGGT AAGAAAGGGG TTTGCGTTAC CCGATATTTT GCGAGAAATA
AATCATAAAT TACACGAAAT ATTGCCCGTG GGCTTTTTCT GTTGTGCAAC CTGCATAGAG
CTAAACTTTG CCGAGCAAAC AATGTTTACT TGGACTGGTG GATTGCCGCC GAGTTATTTA
TATCGTTATA AAACTGACAG TTACGATATT ATCAACTCAT CTAATCTACC TTTAGGTGTT
TTGGCTAGCA GCACTTTTAA GGCCGAACCC ACCCGTATTG AATTGGATAT AGGCGACAGA
TTGTATATGT GGTCAGATGG TGTTTTCGAA TCTCGAAACG CCGAAGGCGA TATGTTTGGC
GAAGATCGTT TACATGATTT AATGCAAGAA TTGCGCGGCA AGAATACGCT TTTTGATACT
ATTTTAGGCC GCGTACATCA ACATATAGGA GCTAACGATA AAGACGATGA TATATCTCTT
GTTGAGATAA TTATCCAAAA TATCGAAGTG GTTCCCGAAA ATACCGATGC AATTTTATCG
CAATCGGGTA TGCAAGATTG GAGTATGGAC CTTACTTTAA GTGAGTCTAG CCTTAAAGAG
TTCGACCCGC TTCCTTTGCT TATTAACATC GTTACGCAAG TGCCCGGCCT GCAAAAGAAC
AGTACTTTTT TATACACCAT GCTTGCAGAG TTATACGCCA ACGCACTTGA GCATGGCGTT
CTTGCCTTAA AATCGGCAGA TAAGCACGAC CCAAGAGGGT TTACTCAGTT TTACCAAGAG
CGAAAAGAAC GTTTAGCCGC GTTAGAGCAT GGTAGTGTGA AGTTTGAGTT TAAACATGAG
GCTAGTGAGG ATGGCGGTTT GTTGATTGTG GTGGTTAAGG ATTCTGGCGA AGGGTTCGAT
GTTGAAGCGC GCGAGCAAAG AAAACGTGAA GAAGCCAAAA CCCGCGATTC CAAAACTGTC
TACCATGGTA GAGGGCTTAC GCTGCTTAGC TCCATAAGCG AAAAACTTAT TATCCACCCA
CCGGGCAACC ATATCGAAGT CCACTTCCGC TGGAAAGCAA CGGTATAA
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| Protein sequence | MDVEQHALKV LIAEDSAPDR LILATIVSNA GHIAIPVTDG VEAVTAFKAE RPDIILMDVL
MPNMGGVEAA KKIREIARDE LVPILFLTSL SDTDSLVECL EAGGDDFVSK PYNRVVLQSK
IKAFGRMREM HTTVAKQRDE IERHHNHLIQ EQRVAKQVFD KIAHSGCLDL SNIRYSMSPL
AVFNGDVLVA EVSPSGNMII LLGDFTGHGL PAAVGSIPLA TTFYGMVRKG FALPDILREI
NHKLHEILPV GFFCCATCIE LNFAEQTMFT WTGGLPPSYL YRYKTDSYDI INSSNLPLGV
LASSTFKAEP TRIELDIGDR LYMWSDGVFE SRNAEGDMFG EDRLHDLMQE LRGKNTLFDT
ILGRVHQHIG ANDKDDDISL VEIIIQNIEV VPENTDAILS QSGMQDWSMD LTLSESSLKE
FDPLPLLINI VTQVPGLQKN STFLYTMLAE LYANALEHGV LALKSADKHD PRGFTQFYQE
RKERLAALEH GSVKFEFKHE ASEDGGLLIV VVKDSGEGFD VEAREQRKRE EAKTRDSKTV
YHGRGLTLLS SISEKLIIHP PGNHIEVHFR WKATV
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