| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2118 |
|---|
| Symbol | |
|---|
| ID | 3967502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 2707271 |
|---|
| End bp | 2708038 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637921208 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_527590 |
|---|
| Protein GI | 90021763 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.690003 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.751692 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAA TTCTTTCAAT AGTGACGGTT AACTATAATT CAGGGAGAAA TTATAAAAAA
ACTGTTGAGT CGTTGTTGCC ATTTCTAGCG TTTGAAGAAG TGGAATTTAT TGTGATTGAT
GGTGGTTCAC ATGATGCTAG TTTTGGGGAT ATTAAAGATA CTTCTAAAAA AATCGATCAC
TTGGTGGTGG AAAGAGATGG TGGAATTTAC GATGCTATGA ATAAAGGTAT TAAAATTTCC
ACGGGTAGGT GGTTGTGGTT TGTGAATTGT GGGGACATTG TAAGCTGTAA TTCAGAGCAA
TTACTCCAGT TTTTGAGCTT GGAGGTTGAG GGTAATCTGA TTTATTCTGA TGTATGTACA
GCCGGTGGCG AAATTAAAAT GAAATTTAGT CTTGGTTTTT TTATGCGGAG CGCATTGAAT
CACCAAAACA TGATTTATAG GAGGGAGTTG CTTGCTGATG GCTTTAATTT AAAGTACAGG
ATTTGCTCGG ACTACCAGCA TACTCTTAGC CACTACAACG AAATTGTACC ACTCAAGTAT
CGAGAGTGTT TGTGTACTTA TAGCTTGGAT GGAGTATCCA GTGAGGTCTC TAAAGCTCGA
AGAGTGCAAG TGTGGCGAGA AAGGTGTGAG GCTCAAATGA CTTTACCGAA AAATTATATG
GTGAAATACG TGATGGTCAG TTTTAGTTTG ATTGTTTATT TGATCAAATG TATAGCGCCG
GAATTAGGTT CCTTAACTGC AAAAAAATTA AAAGATAGGG GAGTATGA
|
|---|
| Protein sequence | MNKILSIVTV NYNSGRNYKK TVESLLPFLA FEEVEFIVID GGSHDASFGD IKDTSKKIDH
LVVERDGGIY DAMNKGIKIS TGRWLWFVNC GDIVSCNSEQ LLQFLSLEVE GNLIYSDVCT
AGGEIKMKFS LGFFMRSALN HQNMIYRREL LADGFNLKYR ICSDYQHTLS HYNEIVPLKY
RECLCTYSLD GVSSEVSKAR RVQVWRERCE AQMTLPKNYM VKYVMVSFSL IVYLIKCIAP
ELGSLTAKKL KDRGV
|
|---|
| |