| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1954 |
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| Symbol | |
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| ID | 3967060 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2457630 |
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| End bp | 2458511 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637921042 |
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| Product | Crp/FNR family transcriptional regulator |
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| Protein accession | YP_527426 |
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| Protein GI | 90021599 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1230] Co/Zn/Cd efflux system component |
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| TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.000254131 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.243634 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTCTC ACTCACATGA CGACAACAGC AGTGCAAGAA TCGGCTGGGC GTTTTTCCTC
AACGTTGGTT TCACGATCAT AGAATTTATC GGCGGCATAC TGACCAACAG CACCGCAATT
ATGGCCGATG CCGTCCACGA TCTAGGAGAT AGTTTATCAA TTGGACTGGC CTGGGTATTG
GCAAAACTTG GAAACAGGCC CGCCTCGCAA AATTTTTCCT ACGGGTACAA GCGTCTTTCG
TTATTAGGCT CATTGATTAA CGGCATCGTT CTGATTGCTG GTTCAGCCTG GGTACTGCAC
CAATCCATTC CTCGTTTATT CGATCCTGAA ATGCCAGTGA CAGAGGGCAT GCTGGCACTG
TCCATTTTCG GTATCGCGGT AAATGGTTTT GCCGCATTTA AGCTTAGCAA AGGAAAAACC
CTGAACGAGA AAGTGCTCAA TTGGCATCTG CTAGAGGATG TGTTGGGATG GGTCGCCGTT
TTTATAGTAT CGGTCGTACT TATGTTTGTG AAATGGCCAA TTTTGGATCC TATATTAGCA
ATCGGGTTTA CTCTGTTTAT TTTGTTCAAC GTCATACGCA ATGTGGGCAC CACCTTAAAA
CTCTTTTTAC AAGGCGTGCC GGACAAAAAT CTTGCGAGAA AAATTGAGCG AAAACTCAAA
GATGTTCAGG AATTTCAGCG TTTCCACCAT TTGCATTTAT GGTCGCTGGA CGGAGAACAC
CACGTGCTCA CTGTCCATAT TGAACTGGAA GCCGATGTTT CACTGGAAGA CCAACGAAAC
TTAAAAAGGC GCTTATCGCA AGAACTTGCT GAGTTTGATT TAAGCCATAC TACCGTGGAG
TTTGAACTGT ATAACGAGCC TTGCAGGGAT CATTCGATTT GA
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| Protein sequence | MHSHSHDDNS SARIGWAFFL NVGFTIIEFI GGILTNSTAI MADAVHDLGD SLSIGLAWVL
AKLGNRPASQ NFSYGYKRLS LLGSLINGIV LIAGSAWVLH QSIPRLFDPE MPVTEGMLAL
SIFGIAVNGF AAFKLSKGKT LNEKVLNWHL LEDVLGWVAV FIVSVVLMFV KWPILDPILA
IGFTLFILFN VIRNVGTTLK LFLQGVPDKN LARKIERKLK DVQEFQRFHH LHLWSLDGEH
HVLTVHIELE ADVSLEDQRN LKRRLSQELA EFDLSHTTVE FELYNEPCRD HSI
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