| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1897 |
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| Symbol | |
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| ID | 3966961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2395595 |
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| End bp | 2397052 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920982 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_527369 |
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| Protein GI | 90021542 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2133] Glucose/sorbosone dehydrogenases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00218638 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCGC GCCCCGCCCC TAAACGCGAT ACTCACCCTG TACGCCGTTT TATTTTTGCG
TCCACCTTAA CCTGTCTAAG TGCCACTTTA TCGCACATCG CAAGCGCCAA CACCGCCTCA
GGCACTTACC AACAATTTTG CGCCAGTTGC CACGGCAAAA ATTTGGACGG CGGTTTAGGT
CCATCACTAA TAGACGATGA ATGGAAACAT GGCGCAGATG ACGCCAGCAT AGCTAAATCT
ATAAACAAAG GTATCCCCAC TGCTGGCATG CCCGCATGGG AGCGCGTACT CGATGCCAAT
CAAGTTAGAG CCTTGATTAT TTATATACAA GAAGAACAAA AACGCGCAAA ACTAAGTAAA
AAGAGCAAAG CCTCTAATAC TGGCGGCGTT TACAAAAGCG AACTTCATAA TTTCACCGTA
GAGAAGTTTG TCGACCTGCC TGGAATAATC TGGTCAATTA GCACACTCAA CAACAATACT
TTTATTGCCA CTATTAAAGA CGGCCGCTTG TTCACCATTA CCAATGGCAA AGCGCAAGAA
ATAACCGGCG TACCCAAAGT ATGGAACCAT AGCCAAGCAG GTATGCTAGA AGTTATGCCG
CACCCGCAAT ACGCAAAAAA TGGGTGGATC TACCTTTCTT ATGTTGATGA AATTTCATCC
ATGCTAAGCA GCAAAGGAAT GACCGCCATT GTAAGGGGCA AAATAAAAGA CAATAAATGG
GTTGAAGAGC AACAAATCTT TAAGACCGAT GAATCGTTTT ATTTAAGCGG TGGCGTACAT
TTTGGTAGCC GATTTGCATT TAAAGATGAT TATCTCTTCT TTAGTATTGG TGAGCGCGGC
CGTCAGGATG ACGCGCAAGA CCTAGGCCTA CCTAACGGTA AAATTCACCG CATCCATAGC
GATGGCTCCA TCCCCAAAGA CAATCCATTT GTTAATAACA AAAACGCCTA TCCCACTATT
TGGAGTTATG GCCACAGAAA CACTCAAGGG CTGGCCATTC ACCCCGTTAC CGGCGACCTA
TGGGAAACAG AACACGGCCC ACGCGGCGGC GACGAAGTTA ATATTATTAA CCCAGCCCTC
AACTACGGCT GGCCAGTTAT TACCTATGGA ATGAACTACA ACGGTACTCC AATGGATGCA
ACAACCCACA AAGAGGGTAT GGAACAGCCG CTACACTACT GGGTGCCTTC AATCGCCACC
GGCGGCATCG ATTTTTATCA AGGTGATGCC TTCCCTAAAT GGCAAAATAG CTTGCTGGCG
TCTGGCATGG GCTCACAAGA ACTACATAGA GTGAGCATTA ATGATAAACA CGATGCAGTG
ACTGGCGATG AAATTTTGTT TAAAGGTTTA GGCCGCGTAC GCGACGTGCT TTCTGCACCC
GATGGGTTAA TTTATGTTGC GCTAAACCCC AACGGTGGTG CTCCCGGTGC TATCTATGTG
CTAAAGCCTG CCAAGTAG
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| Protein sequence | MKARPAPKRD THPVRRFIFA STLTCLSATL SHIASANTAS GTYQQFCASC HGKNLDGGLG
PSLIDDEWKH GADDASIAKS INKGIPTAGM PAWERVLDAN QVRALIIYIQ EEQKRAKLSK
KSKASNTGGV YKSELHNFTV EKFVDLPGII WSISTLNNNT FIATIKDGRL FTITNGKAQE
ITGVPKVWNH SQAGMLEVMP HPQYAKNGWI YLSYVDEISS MLSSKGMTAI VRGKIKDNKW
VEEQQIFKTD ESFYLSGGVH FGSRFAFKDD YLFFSIGERG RQDDAQDLGL PNGKIHRIHS
DGSIPKDNPF VNNKNAYPTI WSYGHRNTQG LAIHPVTGDL WETEHGPRGG DEVNIINPAL
NYGWPVITYG MNYNGTPMDA TTHKEGMEQP LHYWVPSIAT GGIDFYQGDA FPKWQNSLLA
SGMGSQELHR VSINDKHDAV TGDEILFKGL GRVRDVLSAP DGLIYVALNP NGGAPGAIYV
LKPAK
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