| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1848 |
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| Symbol | |
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| ID | 3966852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2338168 |
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| End bp | 2338755 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637920931 |
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| Product | NAD-dependent DNA ligase |
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| Protein accession | YP_527320 |
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| Protein GI | 90021493 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 0.449373 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.815473 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGTATTC AATCATTAGC GAGTTTAATT GTTATAGCAT CAGCCACTTC ATTCACAGTT
GGCTGCAGCA CAGCAAATAC AGATACCGCC GGCACCGAAA ACCAAAACGA CTATGAACTG
GTATCCATGA AAATAGATCA GGACGTTTAC AATGCCACGG GCGGAAAATC AGCAGTAGTT
AGCGTTGAAA CGCCGGCAGA GCAAGAACAA CCCAAGCAGG AAATAACCCA CATAGAAGAT
GTGGTGTACT TTGAATTCGA CTCAAAGGAA TTAACTGCCG AAGCGGAACA GAAACTTGAA
AAATTAGCGA ACGAAGCTAA AAAATCAGAA AACGAAAATA TTGTTGTGGT GCTTAAAGGA
TTTGCCGACG CAACCGGACC AGAAGAATAC AACCAAGAGC TATCTAAAGA GCGCGCCCAA
AACGTAAAAG CCTTTTTAGA AAGCAACGGT GTAGAAGCAA GGGAATATAA TGTAGTGGCA
CTAGGCGAAA GCAACCCCGT AGCCGACAAC GACACCAAAC AGGGCCGCGC CCAAAACCGT
CGAGTTGTGC TTGTAATAGA GCCTACCGAA TCTGTTGCTA GCTTCTAA
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| Protein sequence | MRIQSLASLI VIASATSFTV GCSTANTDTA GTENQNDYEL VSMKIDQDVY NATGGKSAVV
SVETPAEQEQ PKQEITHIED VVYFEFDSKE LTAEAEQKLE KLANEAKKSE NENIVVVLKG
FADATGPEEY NQELSKERAQ NVKAFLESNG VEAREYNVVA LGESNPVADN DTKQGRAQNR
RVVLVIEPTE SVASF
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