| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1689 |
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| Symbol | |
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| ID | 3966476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2157763 |
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| End bp | 2160522 |
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| Gene Length | 2760 bp |
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| Protein Length | 919 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920770 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_527161 |
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| Protein GI | 90021334 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0612] Predicted Zn-dependent peptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000215702 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGGAT ACCAACGTTT ACTTCGCAGC ATAACCTTTT GCCTGCTAGT GCTAGCAGTA
TGCACGCCAA ACGCTTTTGC ATTGAAAGGC GTAGAAAAAG TGGTGCAAAC CGAAGGGATT
ACCGAATACC GCCTTAAAAA CGGCTTGCAG GTGCTGCTAT TTCCAGACCC AACCAAAGAA
ACCGTTACGG TAAACATTAC CTATCACGTT GGCTCCAAAC ACGAAAATTA CGGCGAAACG
GGTATGGCGC ACCTGTTGGA GCACTTGCTT TTTAAGGGTA CCCCCAAGCA TAAAGATATA
CCCGACGAAC TCACCAAGCA TGGTGCCAAA GCAAATGGCA CCACTTGGCT AGATAGAACC
AACTATTACG AAACATTTAA CGCTACCGAA GAAAACCTAC GCTGGGCACT AGAGCTCGAA
GCCGACAGAA TGGTGAATTC GTTCATTAAA AAAGAGCACC TCGACAGCGA AATGACCGTT
GTACGCAATG AGCTAGAACG CGGTGAAAAC AGCCCTTTCC GTGTGCTAAT GCAAAAAATG
CAAGCTGCGT CATATATGTG GCATAACTAC GGCAAAAGTA CTATTGGTGC TCCATCCGAT
TTAGAAAACG TATCTATCGA GCGTCTGCGC AATTTTTACG AGACCTATTA CCAGCCAGAC
AACGCAACAC TTATTGTCGC GGGTAAAATT GATGAAGAGG CAACGCTAAA ACTCATCAAG
AAATATTTTG GCAAAATTAA AAAGCCCAAG CGCACTCTCC CAACGCTCTA CACCCAAGAA
ACCCCCAGCG ATGGAGAGCG CACTGTTACC GTACGCCGAG TGGGCGACAT ACAACTTGTT
ATGGCTTCCT ACCACACGCC TTCGGCTGTC CATCCAGACA GCGCAGCAAT TGCTGTACTC
GCCAATATTA TTGGTGATAA CCCAACCGGA CGGCTTTATA AAAACGCAGT AGAAACTGGT
ATCGCTTCGC AAGTATTTGC GTGGGACCAA TCCTTAAGCG ACGCTGGCTC TTTTAGAGCT
GGCGCAATTG TAGATAAGCA AAAAGACCTC GCTGCCGCTG AGGCAGTACT TATAGAACAA
ATGGAAACCC TAACCGCCAC CCCCGTTACT GAGGCAGAGC TGGAAAGAGC CAAGCGCAGT
ATCGCTAAAG ATTTTGAAAA AGCGATGAAC AACACAGAAT CTGTAGCCAT CGGCTTAAGC
GACTGGGTAA CCACAGGCGA TTGGCGTCTG CGCTTTTTAC AGCGCGACAG AATTGCAGAA
GTCACCCTCG AAGACGTTCA GCGCGTAGCC AAGGCCTACT TTACTCAGAA CAACCGCGTT
GTAGGGCGTT TTATTCCTAC CGAAACACCG CAGCGCGTTA CCCTGCCGCA ACCAGAGAGT
GTTGCCAGCC TACTAGAAGG TTACGTTGGC AAACAAAATG TAAGCATGGG CGAAGCGTTT
GACCCATCCT ATGACAATAT TGCCGAGCGC ACGCAAACCT TTACCGTGGC AGATACCATA
CAAGTTGCCA TGATTCCCAA AAAGACTCGT GGCGAAACGG TGCGCCTCAA TATTCAAATT
AATTACGGCA CTCTAGAAAG CTTAACCGAC ACCCAAGCTT ATGCCGGCAT TGTGGGCCAA
ATGCTCGACA AGGGTACAAA AAACTACACC CGCGAAGAAA TGAAGGATCA GTTCGACAAA
TTAAAAACCT ACGCGGGCTA CGGCAGCAAC CCTGGTAGCG CATGGGCTTG GATGGAAACC
GATAAAGAAA ACCTCATCCC CGCATTGCAA TTGCTGGCTG AAGGTTTGAA AAACCCAACC
TTCCCTCAGT CGGAGCTCGA TGTAATTAAA TCCGCCACCA AAGTTTCGCT TGAATACTCA
CTGCAAGACC CTAATACCAT TGCGCAAACA GAAGCTTCTC GCCGCCTACT GCCAGTAGAT
AAGGGGCACC CGCACTACAG CCCAACACTG CAAGAGAGTA TCGATAGCTT AAACTCATAC
AGTCGCGACG AACTTATCGA ATATTACAAC CGGTTTTTTA GCGCAAACAA TATGATTGTA
TCCGTTGTTG GCGATGTTGA ACCCGAAGTG ATATTAAAAG AATTAGAAGC ACAATTTGCC
GACTGGAAAA ATGATACGCC GTATGTACAT ATCGTTGAAG ATTACAACGC CATCGACACC
ACGCCAGCCG TATTCGATAC CCCCGACAAA GAAAACGGTA TTTTCTTAGC TGTAAACCTC
TACGAAATAC AAGCCGATCA CGAGGATGTA CCCGCATTAA CGCTAGGCAA CTACGTATTT
GGCGGCGGTT TTATTAATAG CCGCTTGGCC ACTCGTCTAA GACAAAAAGA AGGCTGGAGT
TACGGCGCCG GCGCGTCACT TTCGCCCTCC AAACTTAGCC CACGCGCTGC TTTTTGGGGT
TACGCCATTG GCGCACCGCA AAACCTCGAT AACATTGAGC AAGGCTTTAA AGAGGAACTA
GCGCGCTTAC TTGAAGAAGG CTTTACCGAG GAAGAAATTA AGAACGCAAA ATCGGGCATT
GTGCAGCGCA ACCACGTAGC GCGCTCAGAA GATAAAAACT TGGTACAAAT GTTAACAGAT
CAAGTATTTT ACAAACGCTC AGTTCTAGAA GATAAAAAGT TTGAGCAGGC ATTGCTTGCG
CTAACCCCTG AGCAGGTTCA AAAAACCATG CAAAGGTACT TTGACCCCGA CAATATGCTC
TACATCAAAG CGGGTGACAT GACCAAAGCT AAAACACAAG CACAACAACC CGCGCAATAA
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| Protein sequence | MIGYQRLLRS ITFCLLVLAV CTPNAFALKG VEKVVQTEGI TEYRLKNGLQ VLLFPDPTKE
TVTVNITYHV GSKHENYGET GMAHLLEHLL FKGTPKHKDI PDELTKHGAK ANGTTWLDRT
NYYETFNATE ENLRWALELE ADRMVNSFIK KEHLDSEMTV VRNELERGEN SPFRVLMQKM
QAASYMWHNY GKSTIGAPSD LENVSIERLR NFYETYYQPD NATLIVAGKI DEEATLKLIK
KYFGKIKKPK RTLPTLYTQE TPSDGERTVT VRRVGDIQLV MASYHTPSAV HPDSAAIAVL
ANIIGDNPTG RLYKNAVETG IASQVFAWDQ SLSDAGSFRA GAIVDKQKDL AAAEAVLIEQ
METLTATPVT EAELERAKRS IAKDFEKAMN NTESVAIGLS DWVTTGDWRL RFLQRDRIAE
VTLEDVQRVA KAYFTQNNRV VGRFIPTETP QRVTLPQPES VASLLEGYVG KQNVSMGEAF
DPSYDNIAER TQTFTVADTI QVAMIPKKTR GETVRLNIQI NYGTLESLTD TQAYAGIVGQ
MLDKGTKNYT REEMKDQFDK LKTYAGYGSN PGSAWAWMET DKENLIPALQ LLAEGLKNPT
FPQSELDVIK SATKVSLEYS LQDPNTIAQT EASRRLLPVD KGHPHYSPTL QESIDSLNSY
SRDELIEYYN RFFSANNMIV SVVGDVEPEV ILKELEAQFA DWKNDTPYVH IVEDYNAIDT
TPAVFDTPDK ENGIFLAVNL YEIQADHEDV PALTLGNYVF GGGFINSRLA TRLRQKEGWS
YGAGASLSPS KLSPRAAFWG YAIGAPQNLD NIEQGFKEEL ARLLEEGFTE EEIKNAKSGI
VQRNHVARSE DKNLVQMLTD QVFYKRSVLE DKKFEQALLA LTPEQVQKTM QRYFDPDNML
YIKAGDMTKA KTQAQQPAQ
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