| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1544 |
|---|
| Symbol | |
|---|
| ID | 3965072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1990462 |
|---|
| End bp | 1991199 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637920622 |
|---|
| Product | threonyl-tRNA synthetase, class IIA |
|---|
| Protein accession | YP_527018 |
|---|
| Protein GI | 90021191 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0412] Dienelactone hydrolase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTACTA GAAATGAATT TGTGAAGCTT GCTACTGCAA CAGGCGAAAT GCAGGCCCAA
GTATTTCGTC CAAATGTTGA TGGAAGCTTC CCTTGTATTA TTTTTTATTC GGAAATATTT
CAAATTACAG CGCCCATAGC CCGCAGTGCG AATATATTAG CCGGGTTGGG GTTTGTTGTA
ATAGTGCCAG AAGTGTTTCA TGAGTTAAAC CCAATGGGCA CTGTGCTTGG TTATGACGAT
GCAGGCAAAG ACAAAGGCAA TAACGATAAG TGGGCCAAAC CACTAGAAAG CCACGATAGC
GACACGCAAG CAATAATAGA ATTTGTACAG GCGCAACCCT ATTGCACCGG CAAAGTTGGC
GCAATGGGCG TATGTATTGG TGGGCACCTT GCTTTTAGAG CGGCTTTAAA CCCTAATATT
TCCGGTGCGT TTTGTTTATA CCCAACGGAC ATTCACAGCA ACACTCTACC TTGCGAGCCA
GCAAACGACA GCTTCACCCG CGCTAAAGAC ATAACCTGCG AAGTGGTATT AGTTTTTGGT
AAGCAAGACC CGCACGTGCC TGTCGAGGGT CGGCAAATGA TGTATATGCA CTTTCAGGCA
ATAGGTTTAA ATTATCAATG GCTTGAGGTT AACGCACAGC ACGCGTTTAT GCGCGACGAA
GGCGAGCGTT ATGACCCTGC GTTAGCGTTG GAGATGTATT CCAAAGCGCA GCAATTTTTT
CAGCGTACCT TGGCGTAG
|
|---|
| Protein sequence | MITRNEFVKL ATATGEMQAQ VFRPNVDGSF PCIIFYSEIF QITAPIARSA NILAGLGFVV
IVPEVFHELN PMGTVLGYDD AGKDKGNNDK WAKPLESHDS DTQAIIEFVQ AQPYCTGKVG
AMGVCIGGHL AFRAALNPNI SGAFCLYPTD IHSNTLPCEP ANDSFTRAKD ITCEVVLVFG
KQDPHVPVEG RQMMYMHFQA IGLNYQWLEV NAQHAFMRDE GERYDPALAL EMYSKAQQFF
QRTLA
|
|---|
| |