| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1444 |
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| Symbol | |
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| ID | 3966161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1865168 |
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| End bp | 1868722 |
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| Gene Length | 3555 bp |
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| Protein Length | 1184 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637920521 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_526918 |
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| Protein GI | 90021091 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2273] Beta-glucanase/Beta-glucan synthetase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.913527 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAAAA ATAACCTAAT TAAATATGCC GTTAGATGTG CAGCCTTAGG CGCACTCTCT
ACAAGTGCAG TACATGTTAG TGCTACAGAT TACAACGACC CATATTGGAC AAACCCCGAA
GTGAATTCTG ACTTTGTGGA TAATTTCAAC CAAACCCAAA TTGACCGAAG TAAGTGGTTG
GTTGAAACAA ATATTTTTGT AAATGGCGAA GATATCGATT ATCAAGATGT GGAGTACCCA
CAAGCCGATT GGACAATTGG CGTAGGGCAG GACGACCCCG CCGCAATAGA CGGCAAGGCG
CTTATATTAA AAGCGCGCTA CATGGATGGA GAAGTGCAAG ATTACTACGG CGGTGACCCG
GCAAACCCAG GCAAGCCATT GTTTATTCGT TCGGGGCGTA TTGAGTCGCA AATAACCGAC
GATACAACTT TTACCTATGG GAAATTCGAA GCCCGATTAA AAATGCCGCC TGCACGCAAC
GGCGAATTCC CCGCGTGGTG GCTATTAGGT AACTTTCCTG ATGTGGGTTG GACCGCTTGC
CAAGAGTTAG ACATTATGGA ATTTACCGGC AACAACGGTA TGAATATTCC ACAAACCTAT
TGGACCGCCC CCTATGCTGT ACACGGTGGT ACAACAGTCG GTTTAGCAGG CCTTGGTATT
ACTAATCCGC AAGAGCAGTA TGTTACTTAC GGTATTATTA AAACGCCGTC AAAAGTAGAG
TGGTATATCA ACGGTGTGCT CACCAATACT TTTTCTCGCG ACAACCAAGG TGACGATCAA
CCTTGGCCGT ACGTCACCCC CATGCGCATG ATTTTAAACC ACGCAATTAC TCATGTGGAA
TGGCCGGATG TAGGTAACTA CAACGCTTAT TCCCCAGATG CCAACAGGCC CAGCGCCACA
GGTTGGAGCT ATGTGGATAA CAATGGCGTA ACCCAATACG AATATATTGA TGTAGATGCA
ATGAACGCAA ATATCGGTCG GGCGGGTACC GATTTTGTTG TGGATTATGT TGCCCATTGG
CCGCTACCTA CTAGCGATGC CGAACACAAA TATGTAGACG ATAGTAAATC CAGCTTTTTC
CGCGAATCGG GTAACACTAA AGGCTTTTAC AATTTAAAAG GCTGGTTAGC GCCAGTGTCA
GTGACTGCTG ATGGATTTGA TCAACCAGGT TGGGATACCG ATGTGCGCGA CAATGGCGCC
GATAATGCAG CTGATGGCTA TGTAGGCTCT AAGTGGGCAA CACCCAACGA CGACGGTATT
CATTGGGTTG AAGTGGATTA CGGCCAAGAC AAGCAAATTA ATTACTTGTG GTTAGAGTGG
GCGTGGAACC TACCTGCCGA TTACGATATA TACGGTAAAA GCAGTACTGG TGCTTGGGAA
TTTATCACCT CGTCACAACA AGAAGTGGCC ACGTGGGCTA CGCACGTTTT TGATGTAAAT
CGCACTTACC GTTACCTAAA GCTCGTAACA AAAGGCCGCA TAGATAAATC TAGCCCTATT
TGGTTGTTAG AGCTTATGGC ATTTGAAGAT GTGCCAAATA TGTACCCTAA ACCTGCGGGT
ACCACAATGC CTAACCGATC CGTTAACGTG CTAAATAATG GCAATTTTTC GCAAGGGTTA
GATAGCTGGG GAACCGAGGC CTTTGATGGC GCAAACCCAA CTTACAACGT GCAAAATGGT
GCGGCAGTCA TTGCGCTTAC AAACGATGGT GGCTTATCGG GCTCTGTGCA ATTGCACACT
TCAGGTTTTG GTTTAAAGCG TGATTATCGC TATCACATAA GTTTCGATGC TCGCGCCGAT
GTTGCACGAA ATTTAATGGT GCGCTTAGCA GAAAACAACC TTAACCCAAG CGCAGCTGGC
ACCTACCATG TAGAAACCGT TGCTGTGGGG ACAAGCTTTA ACACCTATAG TTTTACTTAC
GATTACACGG GGCAAGGTGA ACCTGCTCGA CTCGCATTTT TACTGGGCGG AATGGGTACT
GCGACCACCT ATATCGATAA TGTGGTTATT CGTGAAGGTG ACTTTATTGG CAGTGGTGAA
CCGCTTGTAG CGGCTATTAG CTCTACCAAC TTTGTTAGCG CCAGTAATGG CTGGGAAACC
GAATGGTGGG GTGCGCCTGC TCGTGCGGTA GATGGAAACT TAGGTAATAA AGCGAGCGGT
AACGATGGTG AAGCCGAAGG CATGGATCTT GATATTACCG TGCGTATTGA CGAGCATTAC
GACGTTAGAG CGGTATTGGT TGCGGGCGAC AATTCACCTG AGCGAAGTTT GGATCAGTTC
CGCGTTGAGT TTGGCAATGG CACACCTTTA ATGGGCTGGA CCGACAGCAC AACAGAGGGT
GTATACGAAG AGTTCGCAAA CTTTAATAAC ACGCCTGCTG CTGGCGAGCG CGATTTTAAA
TTCTTCTTCC GCCCACCTGC AGGGCAACTG GTAGAAGTGG CCGATGTGCA ATTGCTAGCG
GTAGATTTAA TGCCCCATAG AATTTCAGCC ATAGCGTTAG ACGAGGGCGG CACTATTTCG
CCAGCAGGCA CTACGCGCTA CAGCAGAAAC AACACCGATG ATGCAACCTA CACGTTTACC
GCCCCACAAG GGCAATCGGT AAGTAATGTG ATTGTGGATG GCGTGTCGAT GGGACCGTTA
AATAGTTATA CTTTTACCGA TATCAATGCT GATCACACCT TAGCGGTAAG CTTTGGTGGT
GAAGTTGAGC AACCAGAAAC TGGCGATGCT ATCAACTATG CGCCCGAGGC TTACGCAACT
GCGAGTTCCG AGTTACAAAC GGCGGCGTTA GCCAACGACG GCGATGCAGG TTCGCGCTGG
GAGAGTGAGC ACGGTGCAGG CCCTTCGTGG TTAGCGCTAG AGTTAAATGA CACAGTGCGC
GTATCCAAAG TGGTTATTGA TTGGGAAGCG GCAAACGCTG GCACCTATGA AATTCAAGGC
TCGCTAAACG GTATAGATTG GAACACCTTA GAAGTCGTTA GTGGTGGAGC CTTTGGTAAT
CGTACGGATA CGGTTTTACT AGATGGCTCT GCTAGTAATT CTGTCAACCA TATTCGTATA
TACGGTGTAG AACGCAGTGC TGGCAACAAC TGGGGGTATT CAATCTTTAA CGTTGAAGTA
TGGGGCGAAG CAGGTGATAC CTCGATGGAG GAGGAAGTAG AAATTGAGCC TGTATCCGCA
GCAGCTAGCA GTGATTTTCA AGCGGCAGCG AATGCAATAG ATGCCGATGC TGGTAGTCGC
TGGGAAAGCG CGCACGCAGA TGCTACCGCA CACTTAACAT TGGATTTAGC ATCAACCTAT
AAACTCGTGT CAGTCGCTAT AGATTGGGAA GCTGCCAATG CTGGAGCTTA CACCCTAGAA
GGTTCTAGCG ATGGTGTAAA TTGGACAACC ATTGCAAGCT TCACCGGCGG TGCTTTCGGC
AATAGAACCG ATACTTTAAC GGTGAGTGGC AGCCATAGAT TTGTACGCAT TAACTGTACA
GAAAAAAGTG CAGGCAACAA TTGGGGCTAT TCCATTTATG ACGTACGTCT AACTGCATTA
TTACCTACGC CTTAA
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| Protein sequence | MIKNNLIKYA VRCAALGALS TSAVHVSATD YNDPYWTNPE VNSDFVDNFN QTQIDRSKWL
VETNIFVNGE DIDYQDVEYP QADWTIGVGQ DDPAAIDGKA LILKARYMDG EVQDYYGGDP
ANPGKPLFIR SGRIESQITD DTTFTYGKFE ARLKMPPARN GEFPAWWLLG NFPDVGWTAC
QELDIMEFTG NNGMNIPQTY WTAPYAVHGG TTVGLAGLGI TNPQEQYVTY GIIKTPSKVE
WYINGVLTNT FSRDNQGDDQ PWPYVTPMRM ILNHAITHVE WPDVGNYNAY SPDANRPSAT
GWSYVDNNGV TQYEYIDVDA MNANIGRAGT DFVVDYVAHW PLPTSDAEHK YVDDSKSSFF
RESGNTKGFY NLKGWLAPVS VTADGFDQPG WDTDVRDNGA DNAADGYVGS KWATPNDDGI
HWVEVDYGQD KQINYLWLEW AWNLPADYDI YGKSSTGAWE FITSSQQEVA TWATHVFDVN
RTYRYLKLVT KGRIDKSSPI WLLELMAFED VPNMYPKPAG TTMPNRSVNV LNNGNFSQGL
DSWGTEAFDG ANPTYNVQNG AAVIALTNDG GLSGSVQLHT SGFGLKRDYR YHISFDARAD
VARNLMVRLA ENNLNPSAAG TYHVETVAVG TSFNTYSFTY DYTGQGEPAR LAFLLGGMGT
ATTYIDNVVI REGDFIGSGE PLVAAISSTN FVSASNGWET EWWGAPARAV DGNLGNKASG
NDGEAEGMDL DITVRIDEHY DVRAVLVAGD NSPERSLDQF RVEFGNGTPL MGWTDSTTEG
VYEEFANFNN TPAAGERDFK FFFRPPAGQL VEVADVQLLA VDLMPHRISA IALDEGGTIS
PAGTTRYSRN NTDDATYTFT APQGQSVSNV IVDGVSMGPL NSYTFTDINA DHTLAVSFGG
EVEQPETGDA INYAPEAYAT ASSELQTAAL ANDGDAGSRW ESEHGAGPSW LALELNDTVR
VSKVVIDWEA ANAGTYEIQG SLNGIDWNTL EVVSGGAFGN RTDTVLLDGS ASNSVNHIRI
YGVERSAGNN WGYSIFNVEV WGEAGDTSME EEVEIEPVSA AASSDFQAAA NAIDADAGSR
WESAHADATA HLTLDLASTY KLVSVAIDWE AANAGAYTLE GSSDGVNWTT IASFTGGAFG
NRTDTLTVSG SHRFVRINCT EKSAGNNWGY SIYDVRLTAL LPTP
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