| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1355 |
|---|
| Symbol | |
|---|
| ID | 3965304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1750459 |
|---|
| End bp | 1752822 |
|---|
| Gene Length | 2364 bp |
|---|
| Protein Length | 787 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637920431 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_526829 |
|---|
| Protein GI | 90021002 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03503] conserved hypothetical protein TIGR03503 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAAT GCTGGCAGGC TTTTATTGGC TTGGTGTTGA TGCTGGGGTT AGCCGCAAGT
GCAGGAGCCC AACCTGAACT TAATCTTGCT CAAGCGTCAC AAGAGATAGA AAGCAAACTT
GCTGATCGCA GCGGAAAACC TGCTGATGTG CGCTTGGTTA TCGATGTTTC TGGCAGTATG
AAACGCAATG ATCCCGCTAA TTTACGTCAG CCAGCGGTGG ACCTTCTTAT GCAACTGTTG
CCAGAAGGCA GCAAAGCAGG TGTGTGGACC TTCGGCAAGT GGGTAAACAT GCTAGTACCT
CATCAGGTTG TGGATGAGCA ATGGCGAAGC TTAGGTCGAG CAAAGGCATC GGAAATTAAT
TCAGTAGGGC TATACACCAA TATAGGTGAG GCTCTTGAAA AAGCAGCGTA CGACCTAGAT
GCTGCCAGTG ACGAGTATGC AAAGCACATT ATTTTACTTA CCGACGGCAT GGTGGATATT
GATAAGCAGC CCGATAAAAA CACACAAGAA TGGCGCCGCA TAGTCGATGA GGTTTTACCA
AAACTAAAAG CTGCGGGATA TACCATTCAC ACGGTTGCGC TATCCGACAA TGCAGATAAC
AACCTGCTAA AAAAATTGTC CTTACAAACC GATGGTATTG CCAGTGTGGC GCACACTGCA
GACGACCTAA TGAAAATATT CTTAGGCACA TTCGACGCTG CTGCACCCGC CGAACAAGTG
CCCCTTGCAG GGAACCAATT TGTTATCGAT TCCAGTGTGG AAGAGTTTAC CGCGTTAATT
TTTAGAAAAA ATCCTGCCGA TTTAACCGAG CTTATTGGGC CAGATCAAAC GGTATACAGC
GCAGCGTCAC AGGCTGCGGA TGCGAGCTGG CACCGCGCAG ATAATTACGA CCTCATTACT
ATCAAGCAAC CCCTCGAAGG TGAGTGGGGG TTAAGTGTTG ATATGGATGA TGACAGCAGG
GTTACGGTTG TAAGTAACTT AAATTTACGT GTTAAGGCTA TGGCCAACAA CGTATATATA
GGTCACGATC AATTGCTTTC GCTAGTGCTA CAGGAGGATG GTAAAACCAT CACTCGTCCA
GAATTCTTAG AGTTAATGAC CATCACGGCC AAAATTATGG CCGGCAACAA TGAAGAGGTG
TTAGCTGAGT TCTGGCAAAA TGAACTAACG GATGGTGAAC CGCCGCTCGA TGGGCGCTAT
TTAGAAGATT TACCCACATT CGAAAAAGAA GGCGTGTACG AGCTAACCGT GGTTGTGGAC
GGTAAAAGCT TTGTACGTGA ATTCAAGCAT AGTTTTAGTG TGCGTCAGCC CTTTAATGCC
GAAGTAGAAA AACAGTTTAG TGATGGTGAA CTTAATTTTA TATTAAAAGT TGAATCACTT
AGCTCGGATG TACGTGTTGA TAAAACACAA ATTGTTGCGT CAATTACATC GCCGTCAAAA
CGAAAAATGG TTAAGCCCTT AGATTTAACC AAAATGGATA CATGGCAAAC GGAATTAATG
CCAGATGATG AAGGTATGTA TTTTATTGAT ATTCGTATTA AAGGCAGCAC GCTCGATGGC
TCACCTTTTG AATCGTATAT TACCGATGTT AAATTTAAGT TTTCGCATGA GGGGGGCTTT
AGCGAAGAGC AGGAGCCTAT TGTAGACCCA GCTAAAAAAG AAGAAAAAGA GACTAAAAAA
GCCGAGCCAG AAGAACCAGC TAAACCTACA GATGAAGAAG GTGAGGCAGA AGCACAAGAA
GCCGAAAGTG AGCCGCAGCA GCCGGTACCT GCATGGTTAT TATATAGCGC TATAGGTATT
GGTAATTTGC TTCTATTTGT TGGCGGGTAT TTTATAGTGC GAAAATTACT TGGCAGCGGT
AGTTCTGATG AAGATCTATT AGAGCAATTT TCTGAAGAAA GTGTTGAAGA GGCAACATCG
CCAAAAGAAG AACCGAAACC TGTTGATGAT GAAGAAGAGC CGCCCATGGA GGATTTGGAC
CCCGCAACAG CAGACGATGT TGTTGAGGAG CCAGAGCCTG CTAAAGAGCA AGAAAAAGTT
CAGGAGCCGG AGCCTGTTGA AGAGCCGCAG GAGGAGCAAT TAGAGGAGCC AGCGATGGAT
ATGCTGGGTG AGCCTGATGA CGCTGAAGAT ATTGCTGAAC CGGAAGGTTA CGACGCTGTG
GATGACGGCA TAGACGATTT AGATGAAATG GCATTAGATG AGCCAGAGCC GGATGCTGAA
GAGCCAGAGC CTCAAGATGA GGATGATGAT ATGGTGGCCG CGATGTTAAA GGCTCAAGGA
TTGGATTTAG CTGATGACGA ATTAGATGAC GCTATTTCGA ATTTGATCGA TGACCTAGAC
GACGATGAAG AAGAGAATAA ATAA
|
|---|
| Protein sequence | MLKCWQAFIG LVLMLGLAAS AGAQPELNLA QASQEIESKL ADRSGKPADV RLVIDVSGSM
KRNDPANLRQ PAVDLLMQLL PEGSKAGVWT FGKWVNMLVP HQVVDEQWRS LGRAKASEIN
SVGLYTNIGE ALEKAAYDLD AASDEYAKHI ILLTDGMVDI DKQPDKNTQE WRRIVDEVLP
KLKAAGYTIH TVALSDNADN NLLKKLSLQT DGIASVAHTA DDLMKIFLGT FDAAAPAEQV
PLAGNQFVID SSVEEFTALI FRKNPADLTE LIGPDQTVYS AASQAADASW HRADNYDLIT
IKQPLEGEWG LSVDMDDDSR VTVVSNLNLR VKAMANNVYI GHDQLLSLVL QEDGKTITRP
EFLELMTITA KIMAGNNEEV LAEFWQNELT DGEPPLDGRY LEDLPTFEKE GVYELTVVVD
GKSFVREFKH SFSVRQPFNA EVEKQFSDGE LNFILKVESL SSDVRVDKTQ IVASITSPSK
RKMVKPLDLT KMDTWQTELM PDDEGMYFID IRIKGSTLDG SPFESYITDV KFKFSHEGGF
SEEQEPIVDP AKKEEKETKK AEPEEPAKPT DEEGEAEAQE AESEPQQPVP AWLLYSAIGI
GNLLLFVGGY FIVRKLLGSG SSDEDLLEQF SEESVEEATS PKEEPKPVDD EEEPPMEDLD
PATADDVVEE PEPAKEQEKV QEPEPVEEPQ EEQLEEPAMD MLGEPDDAED IAEPEGYDAV
DDGIDDLDEM ALDEPEPDAE EPEPQDEDDD MVAAMLKAQG LDLADDELDD AISNLIDDLD
DDEEENK
|
|---|
| |