| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1321 |
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| Symbol | |
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| ID | 3966092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1715022 |
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| End bp | 1717424 |
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| Gene Length | 2403 bp |
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| Protein Length | 800 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920397 |
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| Product | RND efflux transporter |
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| Protein accession | YP_526795 |
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| Protein GI | 90020968 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1033] Predicted exporters of the RND superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCAAA ATACTGAAGG GCCGGTTTCT AATGAAGATA TTGGACCGTT AACAGCCTAC
GCCAATTTTG TTATTAGGCA GCGGTGGTGG CTTATTGTGT TTACCGTGGT GGCTGCCTTA
GTGGTGATAA GTGGCGCGCG CTTTATAGGG TTTGATAACG ACTATCGCGT ATTTTTTTCC
GACCAAAACC CGCATTTACA AGCATTTGAT CAGCAGCAAA AAACCTACAC CAAAAACGAT
AATATTCTTT TCGTAATAAC CCCCATGCAC GGCGATGTTT TCGCCCCAGA TGTACTTTCG
GCAGTAGAAG AGGCCACTCG TCAGGCGTGG TTGTTACCCT ATGCCTTGCG TGTCGATTCG
GTTACCAACT TTCAATATTC GCAAGCCACA GAAGATGACT TGGTTGTTGC CGACTTGGTA
TCTAACCCCG CAAGCCTTAG TGCCAGCGAA TTATCTGAAA TAAAACGTGT TGCGTTATCC
GAGCCGTTTA TTGTTAATCA GCTTCTATCC GAGAATGCCG ACGTTACGGC AGTTAACATT
ACCTTCCAAA TGCCGCAGGC CTCGCTCGAC GAAGTACCTG CTGCAGTAGA AGCGGTTCGC
GCACTAAAAA CAGAGATAGA AAGTGCGTAC CCGGTTACTG TTCACCTGTC GGGTGTGGTG
ATGCTCTCGA ACGCGTTTTT TGAATCGTCT ATGCAGGATA TGGCGTCGCT TATTCCGTTA
ATGTATTTGG TGATTATTAT CACCATGATG CTGCTTTTGC GCAGCTTTGG CGCAACCTTC
GCTACGGTAT TAGTCATACT GTTTTCTATG CTAACGGCAA TGGGCGCGGC GGGTTGGGCG
GGGCTTAAGC TCACGCCGCC ATCATCGGCT GCCACAACTA TTATCATGAC GTTAGCAGTG
GCAGATTCTA TCCACTTTCT CGTCACCATG TTTTCGGGCA TGCGCAAAGG CATGAGCCGT
CACGATGCTA TTCGCTACAG TATGCGTTTA AATTTTGGCC CTATCTTTCT TACTTCGCTT
ACCACTGCGG TGGGTTTTTT ATCGATGAAC TTTAGCGATA CGCCACCCTT TCACGACCTG
GGGAATATCA CCGCGTTTGG TGTGGTAATG GCTTTTATCT TCTCGATTAG TTTTTTACCT
GCGCTAATGG CCGTGTTACC GGTTAAAGCG CAAATGAGTG AAAGTCGAGT AGGTAAATGG
ATGGATGCTT GCGGCGATTT TGTTATTCGT CGTCGCCGAG TGGTATTTGC TGTGTCGGCG
TTAATCGCTA TTGGCTTGGT TGCCGCAGTA CCGCTTAATC AATTTGACGA TGATTTTGTG
GGCTACTTTG ATGAGAGCGT GCAATTCCGT ACCGATACCG ATTATGTAAA TGAAAATTTA
ACCGGCATCT ATCAAATTCA ATATTCCCTG CCTGCGGGTG AAGATTACGG TGTGAGTAAC
CCTGCCTTTT TGCGCGATAC GCAAAATTTT GTGGAGTGGT TTCGCAGCCA GCCAGAGGTG
GTACACGTAA ACAGCTTTAC CGATACGTTT AAACGTATAA ATAAAAATAT GCACGGTGAT
AACGATGCTT TTTATAGGCT CCCAGAAGAT AAAGAACTCG CTGCCCAGTA TTTGTTGTTG
TACGAGCTTT CATTACCGGA AGGATTAGAT TTAAACAACC AAATGGATAT TGGTAAAAGT
GCAACACAAG TAATTGTTAC CTTAAAAGAT ATGCCTTCGA GCAAGCTCGC CGCAGTGTCT
GCGCGCGGTG AAGCGTGGCT TAAACAAAAT ACTGCTATGG AATCTTATGG AGTGGGGCCT
GCTGTGATGT TTGCTCACAT TTCCGAAACC AATATGCGCA GTATGCTTTT GGGCACATTT
ATCGCCATTC TCGTTATTTC TTTACTTATA ACCTTGGCCT TACGCAATGT GCGTTTAGGG
GTATTAAGCT TAATTCCTAA CCTTTTACCG CTGGGTGCCG CGTTTGGCGC GTGGGGGCTG
TTAGTGGGTG AGGTGAATGT GGCGGTAACC ATGGTGACGG GCATGGCCTT AGGTATTGTG
GTGGACGATA GCGTGCACTT TTTAAGTAAA TACCTGCGCG CAAGACGAGA GCAAGGCTTG
GATAGAGAAG GTGCTGTGCG CTATGCATTC TCGTCGGTGG GTGTGGCCAT TATTGTTACG
TCCATTATTT TAGTGGCGGG CTTTTTAATT TTGGCGCAGT CATCGTTTGG TATGAACGCC
GATATGGGGC TGCTTACCGC AATAACTATT GTGGTCGCGT TGTTTGCCGA CTTTCTGCTA
CTGCCAATCT TACTTATTAA ATTAGATGCC AAAGAATACA AATTACCTGA ATCTAAACAA
GTAACGCTGC CAAACACTTC TACAGATACC GCCAACGCTA AACAGGAGAA TAGCTATGCC
TAA
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| Protein sequence | MSQNTEGPVS NEDIGPLTAY ANFVIRQRWW LIVFTVVAAL VVISGARFIG FDNDYRVFFS
DQNPHLQAFD QQQKTYTKND NILFVITPMH GDVFAPDVLS AVEEATRQAW LLPYALRVDS
VTNFQYSQAT EDDLVVADLV SNPASLSASE LSEIKRVALS EPFIVNQLLS ENADVTAVNI
TFQMPQASLD EVPAAVEAVR ALKTEIESAY PVTVHLSGVV MLSNAFFESS MQDMASLIPL
MYLVIIITMM LLLRSFGATF ATVLVILFSM LTAMGAAGWA GLKLTPPSSA ATTIIMTLAV
ADSIHFLVTM FSGMRKGMSR HDAIRYSMRL NFGPIFLTSL TTAVGFLSMN FSDTPPFHDL
GNITAFGVVM AFIFSISFLP ALMAVLPVKA QMSESRVGKW MDACGDFVIR RRRVVFAVSA
LIAIGLVAAV PLNQFDDDFV GYFDESVQFR TDTDYVNENL TGIYQIQYSL PAGEDYGVSN
PAFLRDTQNF VEWFRSQPEV VHVNSFTDTF KRINKNMHGD NDAFYRLPED KELAAQYLLL
YELSLPEGLD LNNQMDIGKS ATQVIVTLKD MPSSKLAAVS ARGEAWLKQN TAMESYGVGP
AVMFAHISET NMRSMLLGTF IAILVISLLI TLALRNVRLG VLSLIPNLLP LGAAFGAWGL
LVGEVNVAVT MVTGMALGIV VDDSVHFLSK YLRARREQGL DREGAVRYAF SSVGVAIIVT
SIILVAGFLI LAQSSFGMNA DMGLLTAITI VVALFADFLL LPILLIKLDA KEYKLPESKQ
VTLPNTSTDT ANAKQENSYA
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