| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1285 |
|---|
| Symbol | |
|---|
| ID | 3965267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1648241 |
|---|
| End bp | 1650715 |
|---|
| Gene Length | 2475 bp |
|---|
| Protein Length | 824 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637920359 |
|---|
| Product | Beta-galactosidase/beta-glucuronidase-like |
|---|
| Protein accession | YP_526759 |
|---|
| Protein GI | 90020932 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCTA TTTTTATTGT TCGTAAGCCT CTTGCGTGGT GCGCAGGGGC TTGTTTAATT
GTGGCTGCAT TGGCGGGGTG TGAACCTGCT AATAATGACG CGCCGGTTAA AGGTGCTTCG
CCTGTAAAGG CGGCCGAGCC AACAGTAACG CTGTTTAACG ACGATTGGCA TTACTTGCAA
AATAATGCGC AAGATATCGC GGAAATTTCG CAAAGCAAAA AATGGCAGCA TGTAAATATA
CCTCACACGT GGAACGCTAC CGATACCGTC GACGCCGAAC CAGGCTACCG ACGCAATGCT
AGTTGGTACA AAAAGGAGTT TGCGGCAGGC CAAGCCTCGC GTTATGTGCT GTATTTTGAA
GGCGCAAATA TGGAAACGCA GGTGTATATA AATGGCCAAT TAGCAGGTGA GCACATTGGA
GGCTATTTAG GGTTCGATAT AGAGCTAACA CCTTGGTTAA AGAAAAATGC GAAAAATACT
TTATTAGTAA GGGTGAGCAA CGCTTACAAC CCGCACTTAA TACCCTCACA GAAGGCAGAT
TTTTTTATAC ATGGCGGAAT AACGCGTGAT GTATGGTTAA AAGCGTTGCC CGAAACCTAT
ATAGATCGCC TTCAAATCGA CACACCTACA GTTTCAGAAT CCACCGCGCA AACCCGCGTA
CGCGCTTTGT TAAATGTAGG TGCCGCGTCG ACGCAAGGGC TTACGCTAAG TGCCGAGTTG
AAATCACCTA ACGGCAGCGT AGTTTTGTCT GCGAGTAATA TCCAGGTGGC GGCTAACAAC
GAGGTGGAAA TTGTATTTAA AGATATTGCC AACCCACAGT TGTGGTCTGT CGATACCCCA
AATTTGTACA CCATGCAGGT GGCGTTGCGC GATAGTGATA ACAAAATTAT TCACGAGGTA
AATGAAAAAT TTGGTTACCG TTGGTTTGAA ATGCGAGCAG GGCAGGGCTT CTTTGTAAAC
GGTAAGCGTA TGCTTATTCG TGGTACCCAT AGGCATGAAG AGTCTGCCGG TGTGGGCGCA
GCCATTACAA ATGAAATGCA CCGCGCCGAT ATGCAACAAA TTAAAGATAT GGGAGCAAAT
TTTGTGCGTC TTGCCCATTA TCCGCAAGAC CCTGAAGTTT ACCGAGCTGC AGATGAATTA
GGTTTGGTGT TGTGGGATGA ACTGCCTTGG TGCCGGGGTG GTAAAGGTGG CGAAGAGTGG
GAGAAAAACA CAGAGTCGTA CCTTAAACGT CAAATTGCGC AAAACCGTAA TCACGCGAGT
ATTGCGTTTT GGTCGCTGGG TAACGAGATG TATTGGGAAG AAGACTTCCC AGGCGGTGGC
AACGATGACG CAGTACTTGA ATATGTAAAA AAACTTAACG CAATTGCTAA GGCTGCGGAT
TCTTCGCGCT TAACAACCTT GCGTAAGTTT TACCCTGCCG CAAAAGTGGT TGATGCATTT
TCGCCTTCTA TTTGGGCTGG TTGGTATGGT GGTGCCTACG GACAATATGA AGAAGCCATT
CGCGCAGCGA TGAAGGATTA TCCTGCCTTT TTACATATGG AATACGGAGG CTCTAGTCAT
GCGGGACGCC ACACAGAAAC ACCAACCGGT AAAGAAGGTA TTATTGGTGC GCAGGTTTCT
GTAGAAGAGG CGATGAATCA AGCTGTGGTA AAAAGCGTCG CGAAAGATAG CGATTGGAAT
GAAAATTACA TGGTCGATTT ATTTGATTGG CATTTGCATG TGTCTGAATC GGTCGAAGGT
TTTGCAGGCA ATGCTCAATG GGCTATGAAA GACTTTGGTA CGCCTTTGCG TCCTGAAAAC
CCCATACCCT ACGTGAATCA AAAGGGGTTA TTGGATAGGA ATGGTCACCC CAAAGATGCT
TACTATGTGT TTGCAAGCTA CTGGTCCGAT AAACCTTTCT GTTATATCGA GTCTAAAACA
TGGACTCATC GCCAAGGGCC GAAAGAGGGG AGAGATGTTA CGGTTTACTG TAATACTCAC
ACCGCAGAGC TTTTCTTGAA TGGCAACAGT TTAGGTGTAA AACAGCGCGA TCCTCAGCGT
TTTCCCGCGG GCGGTTTAGT GTGGAAGGTG CCATTTAAAG CTGGCGTAAA CCATTTGCGC
GTTGAAGGTA TTATTGACGA TGTAAAAGTG CACGATAAGC TAGATGTTAC CTATTTAATT
GGTGAGCACG GTAAGCTGGA TTCGATAAAA CTAAGTGCTA AACCGCTGGA CTCTGGCAAT
ATTCTTATTG AAGCCGAGGC TTTAGATAGT GCTGGTAATC GTGTACTGAA TTATTCTGAG
CGCGCGTATT TCTTTAATGT TGGCGAACAG GGGCAATTGA TAGAGAATCA AGGTACCCCT
AATGGCAGCA GTATTATCGA AATGGCCAGT GGTTACGCTG CAATTGAATT TATTCCTGGT
GATAAACCCA GCGTCATTGA ATTCAGAAAT CAAAATGTAA AAGGGGTGTA TTTAAACGTT
GATGCGAAGC AGTAA
|
|---|
| Protein sequence | MKSIFIVRKP LAWCAGACLI VAALAGCEPA NNDAPVKGAS PVKAAEPTVT LFNDDWHYLQ
NNAQDIAEIS QSKKWQHVNI PHTWNATDTV DAEPGYRRNA SWYKKEFAAG QASRYVLYFE
GANMETQVYI NGQLAGEHIG GYLGFDIELT PWLKKNAKNT LLVRVSNAYN PHLIPSQKAD
FFIHGGITRD VWLKALPETY IDRLQIDTPT VSESTAQTRV RALLNVGAAS TQGLTLSAEL
KSPNGSVVLS ASNIQVAANN EVEIVFKDIA NPQLWSVDTP NLYTMQVALR DSDNKIIHEV
NEKFGYRWFE MRAGQGFFVN GKRMLIRGTH RHEESAGVGA AITNEMHRAD MQQIKDMGAN
FVRLAHYPQD PEVYRAADEL GLVLWDELPW CRGGKGGEEW EKNTESYLKR QIAQNRNHAS
IAFWSLGNEM YWEEDFPGGG NDDAVLEYVK KLNAIAKAAD SSRLTTLRKF YPAAKVVDAF
SPSIWAGWYG GAYGQYEEAI RAAMKDYPAF LHMEYGGSSH AGRHTETPTG KEGIIGAQVS
VEEAMNQAVV KSVAKDSDWN ENYMVDLFDW HLHVSESVEG FAGNAQWAMK DFGTPLRPEN
PIPYVNQKGL LDRNGHPKDA YYVFASYWSD KPFCYIESKT WTHRQGPKEG RDVTVYCNTH
TAELFLNGNS LGVKQRDPQR FPAGGLVWKV PFKAGVNHLR VEGIIDDVKV HDKLDVTYLI
GEHGKLDSIK LSAKPLDSGN ILIEAEALDS AGNRVLNYSE RAYFFNVGEQ GQLIENQGTP
NGSSIIEMAS GYAAIEFIPG DKPSVIEFRN QNVKGVYLNV DAKQ
|
|---|
| |