| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1279 |
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| Symbol | |
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| ID | 3965261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1639170 |
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| End bp | 1642142 |
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| Gene Length | 2973 bp |
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| Protein Length | 990 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920353 |
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| Product | rhodanese-like protein |
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| Protein accession | YP_526753 |
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| Protein GI | 90020926 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000246729 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.344193 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAC CCACATCCAA CCTAAGTAAA CCTTTGTTTC GCCGCAGTGT GCTTAGCACC
GTTATTGCTT TAACCGCAAT TAGCGCAAGC GCTCAGGAAG CAACTCAAGA CACCAATCTT
GAAGAAGTGG TGGTAACAGC TCAGTTCCAA CGCAACTTAG AAAACGCACT CGATGTAAAA
CGTAACGCAT CTACCATTGT TGATGGTATT TCTGCAGACG ATATAGGCAC GCTACCAGCG
CTAGATATGG GCGAAGCATT ACAAGCGGTG GCAGGTGTAC AGCTAAACCG CGAAGGAGAG
CGTCGCGAAT CCAGTATTAA CTTGCGCGGT TTGCCTTCTG GCTTTGTATT AACTACCGCC
AATGGCCAAA CTTTTTCAAA CCCAACACGC AGCGATAAAG TATTTGGTGC ACCTAACCCA
TTCGGCGCCT ACGACCCTGC TGTCTTTAAC GGTATAGATG TAATTAAAAC GCAAACAGCA
GCCATGCAAG AAGGCGGCAT AGCCGGTACC GTTGACCAAA AGCTTGCAAA AGCATTGGAT
AAAAAAGACG GCTTAGCTAT TTCTGTAGGC GCTCGCAGCG AAGAACTCGC CGATGCACTT
GATAAAGAGT TTGTGATTTC TGGCTCGAAA CATTTAATTG AAGATACCTT AGCCATTACC
GCTACTCTGG CTACGTCCGA CCAAACTTTC CGTCGCGATA CCATTAAAAT TAACCGCTAC
GATAACCTAC CCACCAATGG AAACTTCGTA GGTGCAGATG GCGAAGACTA CGCAACATGG
GCAGCGGCAA ATAATTTGCC AGCCAACGCT GTAGTTAAAA TGCCCGGTGA ATTACGTCAG
GGTTCAGAAA TAAACTCTGG TAGCCGCACT TCGTTTTCTG GTGGTATAGA GTTTCAAGCC
ACAGACGAAC TAAAACTTGG TTTAAACACC GTTTATACAT CGCGCGATAT GGATGACAAC
GGCCAACAAG AACTCGATAT TCGCCCTCGT CAATCGGGTG TAAAAGTAAC TCCGCTTACA
GCTCCATTTG CTACTGGCGC AGTAGACTCT AACGATAACC CGCTCTACTC CGTAAGCGAT
ATTCGCACTA CCAACTCAAG CTATGCTTAC ACCTCGCGTG TATTCGATAT TCTGGAGGAG
TCTCAAGCTG TATTGTTAGA TGCCGAATGG ACCAACGACG TATGGACCTT AGATGGCGTA
GCAACTTTCT CTTCCTCTAC TAACGAGTTA AACGAAATTC TAATAAGCCC ACGCTTCGAC
CGTTTAGCAA GTGGCGACAA TGGCATTGTA AATATTTTCC GTACAGGTCA AGGTAATATT
GGCGATTTTG AAACCACTTT CGAAAATTTT GACAATTTAG ATTTAGACCA ACCTTGGAAT
GTGCTCGATA CCGTAAGCGG CGCAGGTACA GTTACTCAAG TGAATCAAGG TCGCCTGAAT
ACTTTGATCA CAGGCTCTTG GGAAAAAATT GACCGCAACG TGACCTCCTT TGAAGCGAAC
GCATTGCGTG TGTTAGATTC AGGCCCACTA GAAAGCGTAC AGTTCGGCTT CCGCCAATCG
CAAGAAGAAC AAAACTCCGA TAGATTGCGT AGCTCACCAA CAGGCTTGGT GTTAGATGGC
GTACTTACTA ACGATCGTCG TATAGACCCT GCTTACGCAT CAGAATCTGC TTTCTTTGGT
GGTGAAGCCC CAGGGTTTGC TGGCGCAGGC GAAGGCTGGT ACGCATTCGA TGTGAACGCG
CTTACCCGCG ATCTTGCGGC AACAATAGGT ACCGTAAACC CTGCATCCAC CGGTGAAGAA
CCCGTACGAG TACCGCATTC TAATTTAATT GCACGTGGTG GCCAACAAAG TGCAGGCTTA
ATTTACGATA CCACGCTAGA CACTTCTGCA TTGTACGCGA TGGCCAACTT ATCGTTCGAC
GCTTTCAACC GCCCAGTAAC AGGTAATGTG GGTGTCCGTT ACGTATCGTC TACACAAGAG
GCATCCGCAC CTTTCTATGC TTTTGGCATT ACAGATATAA ACAACCCCGA AACCAAAACA
GTAGAAAGCG ATTACAGCTT TGCATTGCCA TCGTTGAACT TTGCTATGGA TTTATCCGAC
GACCTAAAAT TGCGCGTAGG GTATGGTGAA TCTATTTCCC GTCCAAATAT TCGCGCAGCA
ACGCCATCTA CCCGTGTAGA TGCAGGTCGC GAAGGCGAAG TTAACATTGT GCTACCTGGT
GCAAACGTCA AACCTTTCTC GGCCAAATCT TACGATATGT CTTTGGAGTG GTACAACCGT
GAAGGTAGTG CTGTAACGCT AGCTGTATTT AAGAAAGATA TTAACGACTT TTTCCAAACA
GCAAGTTTCT GTAGCGACCA GTTATTGGCC GAATACGGCA TAGATGTAGG CGACATTACA
CAAGGCAGTG ATGACAGCTG CACTACCAAT GGAGTTGATG CGTATGACTC CGCAGATGCC
AACTACATTC TTGCTGGCGA CCAAGTTAAC ATCAGCCAAA TTCGCAACTC CGATGCACAA
ATTTCGGTGC AGGGTTATGA ACTTTCTGTA CAGCAAAACC TAAACTTTTT ACCCTACCCT
TGGAATGGCC TCGGTGGTGT AATCAACTAC TCAAGCACTT CGCAGGATTC ACCGCTTGAA
GCGCGTATAC CAGGTATTTC TGATGATACC TACAACGTAA TTGCTTACTA CGAGCAAGGC
CCATTCGGCA TCCGTTTTGC GTACAACTAC CGCACCGAAT ATGAACTAGA AAGTGTGGGA
ACGTTTAACG GTGAAGGCAA TAAAAATGTT AAAGCGGCTG GCCGTATAGA TATGTCTGCA
TACTATAACG TAACAGAAGA TTTAACCTTA AGCTTTAAAG GTTATAACTT AACCGAATCG
CTTTACGAAG AGTATCAAGA TACCGAACGT CAACCACGTG CAAACCATTT CGATGGCCGC
GTGTTCGTAA TGCAAGCCAA ATACACTTTC TAA
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| Protein sequence | MKSPTSNLSK PLFRRSVLST VIALTAISAS AQEATQDTNL EEVVVTAQFQ RNLENALDVK
RNASTIVDGI SADDIGTLPA LDMGEALQAV AGVQLNREGE RRESSINLRG LPSGFVLTTA
NGQTFSNPTR SDKVFGAPNP FGAYDPAVFN GIDVIKTQTA AMQEGGIAGT VDQKLAKALD
KKDGLAISVG ARSEELADAL DKEFVISGSK HLIEDTLAIT ATLATSDQTF RRDTIKINRY
DNLPTNGNFV GADGEDYATW AAANNLPANA VVKMPGELRQ GSEINSGSRT SFSGGIEFQA
TDELKLGLNT VYTSRDMDDN GQQELDIRPR QSGVKVTPLT APFATGAVDS NDNPLYSVSD
IRTTNSSYAY TSRVFDILEE SQAVLLDAEW TNDVWTLDGV ATFSSSTNEL NEILISPRFD
RLASGDNGIV NIFRTGQGNI GDFETTFENF DNLDLDQPWN VLDTVSGAGT VTQVNQGRLN
TLITGSWEKI DRNVTSFEAN ALRVLDSGPL ESVQFGFRQS QEEQNSDRLR SSPTGLVLDG
VLTNDRRIDP AYASESAFFG GEAPGFAGAG EGWYAFDVNA LTRDLAATIG TVNPASTGEE
PVRVPHSNLI ARGGQQSAGL IYDTTLDTSA LYAMANLSFD AFNRPVTGNV GVRYVSSTQE
ASAPFYAFGI TDINNPETKT VESDYSFALP SLNFAMDLSD DLKLRVGYGE SISRPNIRAA
TPSTRVDAGR EGEVNIVLPG ANVKPFSAKS YDMSLEWYNR EGSAVTLAVF KKDINDFFQT
ASFCSDQLLA EYGIDVGDIT QGSDDSCTTN GVDAYDSADA NYILAGDQVN ISQIRNSDAQ
ISVQGYELSV QQNLNFLPYP WNGLGGVINY SSTSQDSPLE ARIPGISDDT YNVIAYYEQG
PFGIRFAYNY RTEYELESVG TFNGEGNKNV KAAGRIDMSA YYNVTEDLTL SFKGYNLTES
LYEEYQDTER QPRANHFDGR VFVMQAKYTF
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