| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1260 |
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| Symbol | |
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| ID | 3965242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1612490 |
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| End bp | 1613608 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637920334 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_526734 |
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| Protein GI | 90020907 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.551998 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00024653 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAAACTA CACCGTCTAA ACCTACTCCT TCTATCCATG CCCCCTCTAA AATAAAGCCT
CCACCCAAGT CGAATATTTA CCCTCATGGC TTAATTGTGG GCCAAGGTAA GTTCCAATAT
AGAGTGAATT GTGAGTGGGG GATGCAAGAT AGTGAAAAAT ACCCTGTTGA AAATTGTCAT
GACCTCGCGA TGGATTCCCA AGGGCGCATA TTTTTGGTGA CCGATCACCC CCAAAATAAT
GTGCTAATTT ATAGTAGAAC AGGCGAGTTG TTAGATGCTT GGGGCACCAT GTTTCCCTGT
GCGCATTCAA TACGTATTGT GAATGAAAAT GGCGAAGAGG TAATTTACCT TGTTGATAGT
GGTTGGATAA CAAATCGAAA ATGGGATGGT GTATCAACGG ATGCTTGGGA TTCGCCAACC
AATAAAGTAA TTGCCCAAAG TGGTTTTATT GCAAAGCTAA CACTAGACGG CCGCCTTATT
TTTACTATTG GTCACCCGCA AACAATAGGT GTGTACACAC CAGATCAACC ATTTAGGCCT
ACAGATATTG CCGTTGCGCC CAATGGTGAC CTGTACGTGA CAGATGGTTA TGGTTCTGAT
TACGTATTGC ACTATAGCTC AAACGGTCAA TTTATTCGGC GCTGGGGCGG GGCCAATAAT
GCAAATGCTG AGTGTAATTT AGTAAATACT CACGGAATAG AAGTAGATTT GCGCAACCCT
AACGACCCAC ACTTAATAGT TAGCTCTAGG GGCGAGTGCA AATTAAAGCA GTTCAATTTA
GACGGCACCT ACAGAGGCAC TATAGATACC GCCGGCGCAC ATATAGGCGG CCCTGTATTT
AGTGGTGACC ATTTTTTTGC GCCTGTATGC TGGTCTAACA TTAATGGTAA AACAGTGGAT
AATTCTGGCT TTATAAGTGT GTTTGATAAA AATAATAAAG TAGTTACCAA TATAGGTGGC
GCTGCACCTT GCTATAAAAA CGGACAGTTG CAGCCAATGT GTAGCTCGTG GGATGTTTTT
AATCATTGCC ATGGTTTGTG TGTAGATGGT AATGGCTTTG TTTATGTGGG GCAATGGCGC
GCGAACCAAA CTTACCCAAT TCGATTAGAG CCTGTGTAG
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| Protein sequence | METTPSKPTP SIHAPSKIKP PPKSNIYPHG LIVGQGKFQY RVNCEWGMQD SEKYPVENCH
DLAMDSQGRI FLVTDHPQNN VLIYSRTGEL LDAWGTMFPC AHSIRIVNEN GEEVIYLVDS
GWITNRKWDG VSTDAWDSPT NKVIAQSGFI AKLTLDGRLI FTIGHPQTIG VYTPDQPFRP
TDIAVAPNGD LYVTDGYGSD YVLHYSSNGQ FIRRWGGANN ANAECNLVNT HGIEVDLRNP
NDPHLIVSSR GECKLKQFNL DGTYRGTIDT AGAHIGGPVF SGDHFFAPVC WSNINGKTVD
NSGFISVFDK NNKVVTNIGG AAPCYKNGQL QPMCSSWDVF NHCHGLCVDG NGFVYVGQWR
ANQTYPIRLE PV
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