| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1100 |
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| Symbol | |
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| ID | 3968265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1412734 |
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| End bp | 1413795 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637920169 |
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| Product | lipopolysaccharide heptosyltransferase-1, putative |
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| Protein accession | YP_526574 |
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| Protein GI | 90020747 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
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| TIGRFAM ID | [TIGR02195] lipopolysaccharide heptosyltransferase II |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.000330109 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAAG CCAGCGCAAA AAAGAACTTT GCCATCATTC ATCTCGGCTC CATAGGTGAC
TCCATCATGG CATCACCACT TGCCAGCGCC ATAAAGCAGC AGCACCCCGA CGCATGGATC
ACTTGGGTCA CAACACAATC CTGCAAAGAA CTACTTAATG ACAATCCCTG CATCGATAAG
GTGGTTGTCG CCAATTACGC AAAATGGAAG GAATCACTAA AACAACTGAA CCCAAGGCGC
CTCCTTCAAG AGCTATCACA ATTCAAAGCC GAGCTACGCT GCAAACCTTA CGAATACGCA
CTAGACCTGC AAGGGATTCT TAAAAGCGGC CTCGCAGCAA ACCTAAGCAA CGCGAAACAC
AAAATAGGGC TGGGCTCCAG AGAGGGAAGC AACTGGCTCA TGACAAAGAC CATATCCAGA
AATCTCGGAG ACACTACGCA GATCGGCTCG GAATACCGCT ACCTTGCCAA CCAGCTTGGA
TTTTCAGACA ACACGTGGCC AATGCAACCC CACACAACAG CAGAAGCCAT AGATACGGCA
GAGAAAGCCC TGAACAACAA AAACCTTAGC CTTAACGACA AATACATAGT TATTTGCCCA
CAAACAACAG AGAGGGAAAA TCGCTGGCCC AAAAGCTACT GGCAACAAAT ATGCCTTAGA
ATTCGAGGAA GACACCACTT GCGAGCAGTA ATCCTGGGGG AAGGGCAACA AACCAAGCTT
ACCGCAGATC TCGAGAGGCA CGGAGGGGCC GCTGACCTAA CAGGGAAATG CTCAACAGCT
GAAGCAGCAA TAATTATCGA TCACGCAAAA CTAATTATTG GAATAGACAC AGGACTGACA
CATCTAGGGC ACGCCTACCA AACCCCGACA CTAGCACTAT TTGGACCAAC CCACCCATAC
TCACATACAG GCCTAGAAAC AAGCAAAATA CTGCACCTTG ACCTAAACTG CTCCCCCTGC
TTAGGCAACC CGACCTGCAA CGGAAAGTAC GAGTGCATGA GCACAATCAC CCCAGACACC
GTACTCAGCC AAATTAAAAC ATTACTACGC AACAAAAAAT AA
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| Protein sequence | MKQASAKKNF AIIHLGSIGD SIMASPLASA IKQQHPDAWI TWVTTQSCKE LLNDNPCIDK
VVVANYAKWK ESLKQLNPRR LLQELSQFKA ELRCKPYEYA LDLQGILKSG LAANLSNAKH
KIGLGSREGS NWLMTKTISR NLGDTTQIGS EYRYLANQLG FSDNTWPMQP HTTAEAIDTA
EKALNNKNLS LNDKYIVICP QTTERENRWP KSYWQQICLR IRGRHHLRAV ILGEGQQTKL
TADLERHGGA ADLTGKCSTA EAAIIIDHAK LIIGIDTGLT HLGHAYQTPT LALFGPTHPY
SHTGLETSKI LHLDLNCSPC LGNPTCNGKY ECMSTITPDT VLSQIKTLLR NKK
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