| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1085 |
|---|
| Symbol | |
|---|
| ID | 3968249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1387499 |
|---|
| End bp | 1388152 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637920153 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_526559 |
|---|
| Protein GI | 90020732 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2135] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0480767 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.170252 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGCGGTA GATTTGTAAA TCATTTAGCG GATATGCATC GCTGGGCAGC CTTGCTAAAG
GGTTGGCCTG CAGGCGGCGC ATTGAGCTAT AACGTTGCCC CTACTACTCA GGTACCTCTA
CTTACCGCGC AAGGCTCACA GGTGATGAGT TGGGGCTTGG TTCCCGCATG GTCTAAGGAA
GCCAAAACAC AATACGCCAC CTTTAACGCC CGCTTAGAGA GCGCCGCCGA AAAGCCTGCC
TTTCGCAATG CTTGGCGAGC AAAGCGCACC TGTATTGTGC CTATGCTCGG CTATTACGAG
TGGCGGGTTG AGGGGGGTAA AAAACAACCT TATCTTGTGC AGCATGCATC GCAGCCTTTA
TTTGTTGCGG GGCTATGGGA GCCGCGCCAA GCTGCCTCAT CATTTACCCT ACTTACTCGC
CCTGCGTGTG AAAACCTAAA CGCGTTGCAC CCGCGCCAGC CCTGTGTGTT GCCTGTTGAA
GCGTTAGAGG GGTGGCTGCA AGGGGATATA CAATTAATGG ATGAGCCGCC AGTACAGGTG
AATCAATATT TGGATTATTA CGCGGTATCC ACCGAGGTGG GCAGCGTAAG GAATGATCAT
GAGCGCCTTA TTAAGCCGCT TGAGGGCGAT AGCGAGCCAG ACCTGTTTGG CTGA
|
|---|
| Protein sequence | MCGRFVNHLA DMHRWAALLK GWPAGGALSY NVAPTTQVPL LTAQGSQVMS WGLVPAWSKE
AKTQYATFNA RLESAAEKPA FRNAWRAKRT CIVPMLGYYE WRVEGGKKQP YLVQHASQPL
FVAGLWEPRQ AASSFTLLTR PACENLNALH PRQPCVLPVE ALEGWLQGDI QLMDEPPVQV
NQYLDYYAVS TEVGSVRNDH ERLIKPLEGD SEPDLFG
|
|---|
| |