| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1063 |
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| Symbol | |
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| ID | 3967857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1362031 |
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| End bp | 1363386 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637920131 |
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| Product | GGDEF family protein |
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| Protein accession | YP_526537 |
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| Protein GI | 90020710 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.449039 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAATC AGGCATACGC ACATTCTTCC GCCCTGCGAA CTCAGGTGTA TTCGGTTGTT
CGTATTGCTG CCTGCCTACT TACCCTTGCG GCGGTATTGC TGCGCTTCTA TATTCCAGAA
AAACGCCTAT CGCTTTACCC TGCAGAGACA GTCTACCCCG CAATATTCGA TTATAGAGAC
GGCGGAGCAG GCAGTATTGC CACATGGATA GACGAAGAAA ACAGTATTTG GCATTGCCAC
AAACCTCCGC ACAACGATAT CTACTCCTGC GGGTATTCCC TTTCTTGGGG GGGCGAGCCC
TACGAGGGGT TAAACCTATC AAAATATACA ACGCTTAAAG TAAAGCTTGC TTATAAGGGA
GACGCCACTC GAATTCGCGT GTTTATGCGC AACTACAACC CCGCTTACTC TCACCCCAAC
GACGGCAACT CGGCAAAGTT TATGTCGACT TTGCTGCGCG TTCAGGATCT ATATAGGGAA
ATATCCATCC CGCTGGAAGA CCTGTCTGTT ATCGACTGGT GGATAACGGC CTATGACATA
CCGCGAGAGC AAGCGCTGAT AGAGTTCGAC AATATTGTTA CCACGGGTTT TGACCTTGTA
GAACCTGGCG ACCACATTAT TAACGTTGAA AAAATAGAGT TAGTGGGTGA ATGGGTGAGC
GCAGAAAGCA TGTACCTCAC CCTTATTTTG ATATGGATGA CTATATTAAT TTGGGAAGGG
CTTAGCCGTA TTTATTGGCT GCAACAGAAA GCTAAAAAAG AGGAACGCCG ACTTTCCGAA
TTACTTAACA ACTACCAACA GCTAGAAAGT GAAAAGCGAG AAATTGAAAA CCTTTCCAAC
CGCGACACAC TCACTCAAGC GCTCAATCGC AGCGGCTTAT CGCAAAAAGT AGAAACAATA
TTCAATAGTG AATCACCCGC ACCACAGGTA GCCGTATTTG TAATAGACAT CGATTTTTTC
AAAAGCATAA ATGACACCTT TGGTCACGAC GTAGGTGACA CCACATTGCA AAAAGTGGTG
AATATTATTC AAACGAATAT GCGCAGCGAA GACATTCTAG GCCGTTGGGG CGGCGAGGAG
TTTGTGCTTA TTACGCGGGT TACCGACCTA AAAACCGCAT TGCATGTAGC CAATAAATTG
CGCAAATGTA TCGCCGTGCA CAATTTTGAA TTCCCAGATG ATAGGCAGCT AACCATTAGT
ATGGGCTTAA CCATGTCTGA AATTGGCGAC AGATTCGAGG ATGTATTTAA GCGCGCAGAT
GTTGCCCTTT ACAAAGCTAA ACATACCGGC AGAAATTGTG TGAAAGTAGA AATAAAAGAA
GCAGAACATA GCGCTAAACA AAAAGGGCCG CAGTAA
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| Protein sequence | MNNQAYAHSS ALRTQVYSVV RIAACLLTLA AVLLRFYIPE KRLSLYPAET VYPAIFDYRD
GGAGSIATWI DEENSIWHCH KPPHNDIYSC GYSLSWGGEP YEGLNLSKYT TLKVKLAYKG
DATRIRVFMR NYNPAYSHPN DGNSAKFMST LLRVQDLYRE ISIPLEDLSV IDWWITAYDI
PREQALIEFD NIVTTGFDLV EPGDHIINVE KIELVGEWVS AESMYLTLIL IWMTILIWEG
LSRIYWLQQK AKKEERRLSE LLNNYQQLES EKREIENLSN RDTLTQALNR SGLSQKVETI
FNSESPAPQV AVFVIDIDFF KSINDTFGHD VGDTTLQKVV NIIQTNMRSE DILGRWGGEE
FVLITRVTDL KTALHVANKL RKCIAVHNFE FPDDRQLTIS MGLTMSEIGD RFEDVFKRAD
VALYKAKHTG RNCVKVEIKE AEHSAKQKGP Q
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