| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0952 |
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| Symbol | |
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| ID | 3965347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1234050 |
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| End bp | 1236770 |
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| Gene Length | 2721 bp |
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| Protein Length | 906 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920019 |
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| Product | ribosomal protein L17 |
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| Protein accession | YP_526426 |
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| Protein GI | 90020599 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000237948 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000537684 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAAGT TCTACATAAA ACCTTTAGTA GCAGCAATTG CGTTAACTGC AGCAGGCCAA
GGCTATGCTC AGGAAGCAAG TGCTGAAAAC ACATTAGAAG AAGTGGTTGT TACTGGCTTT
AGAGGCAGTT TGCAAAGCTC TTTAAATACT AAGCGCGATT CTGTTGGCGT AGTTGATGCA
ATATACGCTG AAGATATTGC GGACTTTCCA GATAACAACT TAGCAGAATC TTTACAGCGT
ATCCCTGGTG TTGCCATATC TCGCGCTGGC GGTGAAGGTC AACAAATTAC AGTTCGCGGT
CTTGGTCCTG ACTATACTCG CATTCGTATT AACGGCATGG AGTCTATGTC ATCTACTGGC
GGTACAGATG CCATTGGTGG TAATAACCGC GGCCGTGGTT TCGACTTCAA CACATTCTCT
TCTGACCTTT TTAGCAACTT GATTGTAAGC AAAACCAACT CTGCTGAAAT TGAAGAAGGT
TCACTAGGTG CGACAGTAGA CCTTAAAACT GCTCGCCCAA TGGAGCTTGA CGATTTCGTT
CTGTCTGTAG GTGGCAATCT AAACTACAAT GACAAGTCGG AAAAAGTAGA CCCGAAAATT
GCTGTAATGG TAAGCAAACA GTTTAGTGAT ACTTTTGGTG CTTTGCTGTC TGTATCTTAC
GCTGACCGCA ACATTACCGA TGAAGGCAAC TCTACCGTTC GCTGGGCTAC CTACCCAGAC
GTAGGCTCAT ATCGCGGAAT CACCGACCCA ACTCTTTCTC CTGAACTTGC AAGATTAGAA
GAAACTGAAG AAGACCGTCG CTTGTTCCAT CCACGTATTC CTCGCTACGA TTCATACACA
CACGAAATTA CGCGCACCGG TGTCGCTGCC ACTTTCCAAT GGCTACCTAC AGATGCAACC
GATATAGTCT TGGATGTGCT GTACTCTAAG CACGACGCCA CGCGCAATGA GATCTTCATG
CAAGGTATCG GTAACTCAAC AGCCGATTAC GACGATTACA ATTTCACTGA TTACGAAATA
GACGGTCAAA CAATCGTATA CGCAGCAATT TCTAACGCTA ATGCTCAAGT TGAAAACCGC
TTCGACGAAT TAACCACCGA GTTCCAACAA GTCACCTTGT CGGCTACTCA CGAGTTTACC
GACCGTTTAC GCATGAACGT TTTGTTAGGT AACTCTTCAT CCGAGTTCAG CAACCCGGTC
CAAACCACCA TTATTGCCCG CGCCAATGGT GTAGGTATGA CTTGGGATTA CCGCGGTGAT
AGCGCTGATA CCCTACTAAC TTGGGGTGAA GACGCTTATG ATGAATCAAG CTACACCTTA
TCCGGTATTC GTCAGCGCCC ACAGGGTACT AACAACGAAT TCACTAACCT GACGGCAGAT
CTAGAGTTTG ACTTTAACGA TTCCGTAACG CTGAAAGCAG GTGTTACCTC GAAGTCGTTC
AAATTCGACA CTTATCAATC GCGTTACGCA ACTAACGAAG GCGCGAAAGG CCTAACTATT
GCTGGCAACA TGTACGAATA CGATTCAGGT TTAGGCGATG GCCGAGCTTG GCTAGTGCCA
GACTTAGACA AATTTATCGA TGCGGGCATT TTGTCCAACT CGGGTGATTT TGCTTTGAGT
CCACGCACCA ATGATATCTA TGCTGTCGAA GAAGACACCA CCTCTCTGTT TACTCAAGTG
GACTTCAATA CTCAATTAGG CGAAATGCCA CTTTCAGGCA ACTTTGGCTT CCGTTTTTTC
AGCACCGACC AAGCCTCCAC CGGTTGGTTT GAGAATAGCG AAGGCAACGA CGTCCAAGAG
TGGGTTGAGC ATTCGTACGA TGATATCTTG CCAGCCTTGA ACCTACGCTT GGAGCCGATG
GAAGATGTAG TATTCCGCTT TAGCGTTTCT GAAGGTATAA CTCGCGGTGG CTTAAGCTCA
CTACGTGCAG ACCAAGGTGT GAGCGTAAAT GGTAGCTCTT ACACCATCAC CGGTGGCAAC
CCGTTCCTAG AGCCAACTAA AGCGACAAGC TACGATGCCG GTATCGAATT GTATATAACC
GATACTTCAG CAATGTCTAT GACCGTGTTT AAGAAGGAAA TTGGTAGCCA TATACAACGT
CTACGCGACC AGAAAACCCC AGCTGAGCTG GGCATTCCCG CTAGCGAAGT AGCTGCACAA
TGTGAGAACG CTGCTCAAAA CCCAGAGTCT TGCAACGTGA ACGCAGTATT CGACCGCTCA
GTTCCATTGA ATGGCCCAGG CGGTGATCTA CACGGCTTCG AATGGCAGCT GCAAGGTGAC
TTCGGCGCAT TCGGCGATGC ATGGGCCAAT GTTGGTTATA TTGCCAACTA CACCTACGTA
AAAACCGAAC TAGCCTACTT AAATGAATTT GGTGCAGTAG ACGTAGTTGC CAACCTGCAA
AACCTATCAG AAGTGACTAA ATCCGCCACT CTTTACTACG AAAACGATGT ATTTAGTGCA
CGTATCGCCC TAGTAGATCG CAGCGATTAC CTCACTGACC CGCGTGGCCG AGACTCAAAC
AATCAACACG GCACCTATGG TACCAGCAAT GTTGACTTCT CTTCGTCGTA CCAATTTAAC
GACAACCTGA AGTTCAATTT CGACATTAGC AATTTAACCA ACCAAGGTGA TGACCAATGG
GTTGACCGTG AAGATTTGCG TTTGTCTTAC TACCACGAGA CTGGCACTCA GGTCTCATTA
GGCGCGCAAT ACAAATTCTA A
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| Protein sequence | MKKFYIKPLV AAIALTAAGQ GYAQEASAEN TLEEVVVTGF RGSLQSSLNT KRDSVGVVDA
IYAEDIADFP DNNLAESLQR IPGVAISRAG GEGQQITVRG LGPDYTRIRI NGMESMSSTG
GTDAIGGNNR GRGFDFNTFS SDLFSNLIVS KTNSAEIEEG SLGATVDLKT ARPMELDDFV
LSVGGNLNYN DKSEKVDPKI AVMVSKQFSD TFGALLSVSY ADRNITDEGN STVRWATYPD
VGSYRGITDP TLSPELARLE ETEEDRRLFH PRIPRYDSYT HEITRTGVAA TFQWLPTDAT
DIVLDVLYSK HDATRNEIFM QGIGNSTADY DDYNFTDYEI DGQTIVYAAI SNANAQVENR
FDELTTEFQQ VTLSATHEFT DRLRMNVLLG NSSSEFSNPV QTTIIARANG VGMTWDYRGD
SADTLLTWGE DAYDESSYTL SGIRQRPQGT NNEFTNLTAD LEFDFNDSVT LKAGVTSKSF
KFDTYQSRYA TNEGAKGLTI AGNMYEYDSG LGDGRAWLVP DLDKFIDAGI LSNSGDFALS
PRTNDIYAVE EDTTSLFTQV DFNTQLGEMP LSGNFGFRFF STDQASTGWF ENSEGNDVQE
WVEHSYDDIL PALNLRLEPM EDVVFRFSVS EGITRGGLSS LRADQGVSVN GSSYTITGGN
PFLEPTKATS YDAGIELYIT DTSAMSMTVF KKEIGSHIQR LRDQKTPAEL GIPASEVAAQ
CENAAQNPES CNVNAVFDRS VPLNGPGGDL HGFEWQLQGD FGAFGDAWAN VGYIANYTYV
KTELAYLNEF GAVDVVANLQ NLSEVTKSAT LYYENDVFSA RIALVDRSDY LTDPRGRDSN
NQHGTYGTSN VDFSSSYQFN DNLKFNFDIS NLTNQGDDQW VDREDLRLSY YHETGTQVSL
GAQYKF
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