| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0943 |
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| Symbol | |
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| ID | 3965338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1220113 |
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| End bp | 1224063 |
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| Gene Length | 3951 bp |
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| Protein Length | 1316 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920010 |
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| Product | ribosomal protein S5 |
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| Protein accession | YP_526417 |
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| Protein GI | 90020590 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000215001 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGAAATA AATTAGGCTC AATGTTAAAA ATGAGCGCAG CCATTGGCGG TTTAGTTGCA
GCGGGTTCCG CTGTTGCAGG CCCAGTTGGT TTCGCAAGTT TAAACGGCGG CACTACCGGC
GGCGCGGGCG GGCAAGTTGT ATATGCTAGC ACCGGTGCTG AAATTAACCA GGCTATGTGT
AATCGCGCAA GCGACGATAC ACCGCTAATT ATTTATGTGA CGGGTACCAT TAACCACGGT
AACACCGCCA AGTATTCTGG TAGCTGCGAT ACCACTGCAG ATGAAATTCA GTTTAAAGGT
GTAAAAAATA TATCGTTGAT AGGAACGGGC AGCGGTGCTG TGTTCGATCA AATCGGTATT
CACCTACGCG ATACCTCGAA TATTATTTTG CAAAATTTGC ATATTAAAAA CGTTAAGAAG
TCTGGTTCGC CTACTTCGAA TGGCGGTGAC GCTATTGGTA TGGAATCTGG CGTATACAAT
GTGTGGGTAG ACCACTGTGA GCTAGAAGCT TCAGGCGGTG AAAGTGATGG ATATGATTCA
TTGCTAGATA TGAAAGCCAC CACGCAGTAT GTAACGGTTT CTTACACTTA CTATCACGAT
TCTGGTCGCG GTGGTTTAAT GGGGTCTAGT GATAGCGACG ATACCAATAC CTTCGTCACC
TTCCACCACA ACTACTACGA AAATATGGAT TCGCGCTTGC CGTTACTGCG TCACGGTACA
GCTCATGCAT TTAACAACTA CTATAATGGT ATTGCTAAAT CTGGCATGAA CCCACGTATA
GGTGGGCAAA TAAAAGCGGA AAACAATTAC TTCGAAAATG CGCACAACCC AATTGGTACT
TTTTATACAG ACGATATGGG TTACTGGGAC TTACGCGGCA ATATATTTGG CAGTAACGTA
ACGTGGGCGT CTGCGGATGA TGAAACCCCT GCAGGCCCGA ACCCAACATC CACTACGTCT
ATTCATATTT CTTACCCCTA TGATCTAGAT GACGCTGCTT GTGTGCCTGA TATTGTAAAA
TCCACAGCAG GTGTGGGTAC TGGCCTAGCG GTTTCAGACG GAAGCTGCAC CATAACAACG
CCACCTTCAA CGAGTTCGTC TAGCTCCAGT TCTAGCTCAA CCTCGTCGAC TGGTTCGAGT
TCGTCTTCAA GCTCTTCCTC TTCAAGCAGC TCTAGCTCCA ATGGCGGCAG CTTAGTATTA
GGTAACAACC TTTCAATTGG TGCTGGCTCT GATGGTAGTA GCAAGGGAGC AGGTTCGTAC
GGCAATGTGC GCGATGGCGA TGTAAGTAGC TATTGGGCGC CGAGTGGCAG TACTGGTCGT
GTTTCAATTA AATGGAGCGG CAGCCAAACT GTTAACGCTA TTGTTATTAA AGAAGCGGCA
GGCTATGAAG GTAATATTAG TGGTTGGCAA GTAACTGATA ACGATACCGG TGCAGTATTG
GCTGCTGGCT CAAGCGTAGG CACAATTACG TTTGATGCGG TAACGACTAG CAAGATCAAT
TTCGAAATTA CTTCTTCTAA CGGTACACCA ACGGTAGCGG AATTCGAAAC ATATAATGCT
ACAGGTTCTA GCTCTTCAAG CAGCTCGAGT TCTTCTAGCT CTTCATCAAG TAGCTCGTCT
AGTTCTTCAT CGAGCAGTTC GTCTAGTAGT TCTACAGGCG GCACCGCTAC TTTAAGTACA
ACGGTTTCTG GCGATCAAGT AACGTTGAAT TGGAGCGTAA ATAATGCAAC CGTAACTGGT
CAGCAAATTT ATCGCGATGT GGATTCAGAC CCAGCTGGCC GTGTGCGCAT TGCATCCGGT
GTAACTGGAA ATACTTACAC AGATACCGGT TTGGCTAACG GAACTTATTA CTACTGGGTA
AAAGTAACCG ATTCAAACTC AGCTACAATT AATTCCAACT ACTCAGAAGC GCAAGTGAAT
GTTTATACAA CATCTACTAC AACGTTTGAA GAGGATGCGG GTTATTGCTC GGTAGACGGT
TCAGTAGATA GCAATAACAG TGGCTTTGCT GGCAGTGGTT TTGCTAATAC CGATAATGCT
TCGGGTAATG GCGTAAACTA CGCGGTAAGC GTACCCGTTG CTGGTGTGTA CACGCTGCAA
GTGCGTTTTG CTAATGGCTC AAGTGCACGT CCTGCTGATG TGTTAGTGAA CTATGGTAAC
GCCGGTGTAT TTGATCTGCC TAGCACAGGT TCTTGGACCA GCTGGAGCAA CTCAAACGAA
ATTAGCGTTA ACTTAGTTGC TGGCAATAAT ATTATTCGTT TAGAGGCTAC CACGTCTGGC
GGCTTGGCGA ATATTGATAG CCTATCTGTA ACGGGTGTAG AGCCTTCTGC AGGTGACTGT
AACGGTAGTG TTGGTTCTAG CAGTTCTAGT TCTTCCAGCT CTTCTACTTC TAGCACCAGT
TCATCTAGCA CTAGCTCTGG TGGCAGCTCT ACTAGCTCAA GCTCAACGTC TAGCTCATCT
ACAAGCTCTA CATCTAGTAG TTCAACCAGC TCTAGCAGCA CGTCTTCTAC CTCAAGCTCT
TCGGGCGGTG GTACGGCAAG TTGTGAGCAG TTGATTAACG ATCCAAGTGT TAACTGGGAT
GAGTCTGCAC TGGCTTCAGA GCAAGAAATT GTAGCCTGTT TGGCTCAGTC TCTAGGTAGC
CCTGTTGGCT TTGGGGAAGG TACTACCGGT GGTTACGATC CAAGTGGCGG CAGCAACCTT
GTTGTTATTA AAAAGAACAT AGGTATTTCT GTTGAGCAAC AAATTTTGGA TGCTATAAGC
ACCGAAAACC ACAACTGGAT TGTGTTCGAC AAAGATGATT TTGCTGCGCG CACTGCGGTA
GCGATGTATC GCTTAGATTG TGACAATGCC GATGTGCGTT CAGCATTGGG TGGCGCAAGT
GCTGCACAAT GTCGCGATCA TATAGCTTGG TGTTCTGCTA ATGGTATTTC TGACGAGCAT
GACTGTGAAA ATGAATTCTT TAACAACCGT TTAAATGATT CAGATTTGCC AATCCGCAAT
CAAATGATTC AGTCAAACAC TACCATTGAT GGTCGTGGTG CAAACGCATA CTTCTTCTTT
AATGGTTTCT CCATTGGTAA AGATAGCAGT GGTGCAAGCT TGTACGCAGC GCAAAATGTG
ATTGTAACGA ATAACGAGTT TATTGGTGCC GGTCACACTG AAGATCACGA TCTAGACCCA
GATATGATTC GATCTACTGG CGAATCGAAC AAAATTTGGA TTCACCAAAA CACGTTCGAC
CATACTGGTG ATTCTGCGTT TGACGTAAAG GTGGGTGCTT ACGATATAAC AATATCATTC
AATAAGTTGG TGAACGTGAA GCGTGCTGCG CTACATGGTT CAAGTGATAG CCGAGCAATT
AACTCGCAAA TCACAACCAC TATGCACAAC AACCTGTTCT ATACTTCAGA TGATCAATAC
GCGCTAAGTA CCTACGACAC TTTGCGTCGT GTACCGCTAA TGCGTCGCGG TCAATCACAC
ATGTTTAACA ACGTTTTCTA CGGTTACCGT AAAGATATTC TAAGCGTGCG TGTTGGCGGT
CGTATCGCCT TTGAAGATAA CATTATTTTG AATAAAGAAA GCAGCTCTAC CCCAGGTGAT
GGCCTGAAGA AAGGCGACGA CATGGAATAC TATGTTGAAA CCTTGTTGCG CGACTTCCGT
GAGGGTGGGT TAGAAATTAG CGGTAGCTAT GTATCGTTTG CAGATAGCGC TTGTAATTCC
TATGGCGCAT CGGGTGACTT AACCGCATCG CATGGTGCTA CGCCAGATAT GTTTGATGAT
TACAGCTCTG CATCTAAAAA TACTATATCA GCCAATCGCT TTGTTGCTGG CGATGACTTA
ACTGACTATG TATTTGCTAC TGCAGGTAAG GGCGGTAAAG CGCCTTATGT TTCCACCTTT
ACTGCTGGGC AAAATAGCCT TATTTCACAG GCTAACCCAG TTTGTCAGTA G
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| Protein sequence | MRNKLGSMLK MSAAIGGLVA AGSAVAGPVG FASLNGGTTG GAGGQVVYAS TGAEINQAMC
NRASDDTPLI IYVTGTINHG NTAKYSGSCD TTADEIQFKG VKNISLIGTG SGAVFDQIGI
HLRDTSNIIL QNLHIKNVKK SGSPTSNGGD AIGMESGVYN VWVDHCELEA SGGESDGYDS
LLDMKATTQY VTVSYTYYHD SGRGGLMGSS DSDDTNTFVT FHHNYYENMD SRLPLLRHGT
AHAFNNYYNG IAKSGMNPRI GGQIKAENNY FENAHNPIGT FYTDDMGYWD LRGNIFGSNV
TWASADDETP AGPNPTSTTS IHISYPYDLD DAACVPDIVK STAGVGTGLA VSDGSCTITT
PPSTSSSSSS SSSTSSTGSS SSSSSSSSSS SSSNGGSLVL GNNLSIGAGS DGSSKGAGSY
GNVRDGDVSS YWAPSGSTGR VSIKWSGSQT VNAIVIKEAA GYEGNISGWQ VTDNDTGAVL
AAGSSVGTIT FDAVTTSKIN FEITSSNGTP TVAEFETYNA TGSSSSSSSS SSSSSSSSSS
SSSSSSSSSS STGGTATLST TVSGDQVTLN WSVNNATVTG QQIYRDVDSD PAGRVRIASG
VTGNTYTDTG LANGTYYYWV KVTDSNSATI NSNYSEAQVN VYTTSTTTFE EDAGYCSVDG
SVDSNNSGFA GSGFANTDNA SGNGVNYAVS VPVAGVYTLQ VRFANGSSAR PADVLVNYGN
AGVFDLPSTG SWTSWSNSNE ISVNLVAGNN IIRLEATTSG GLANIDSLSV TGVEPSAGDC
NGSVGSSSSS SSSSSTSSTS SSSTSSGGSS TSSSSTSSSS TSSTSSSSTS SSSTSSTSSS
SGGGTASCEQ LINDPSVNWD ESALASEQEI VACLAQSLGS PVGFGEGTTG GYDPSGGSNL
VVIKKNIGIS VEQQILDAIS TENHNWIVFD KDDFAARTAV AMYRLDCDNA DVRSALGGAS
AAQCRDHIAW CSANGISDEH DCENEFFNNR LNDSDLPIRN QMIQSNTTID GRGANAYFFF
NGFSIGKDSS GASLYAAQNV IVTNNEFIGA GHTEDHDLDP DMIRSTGESN KIWIHQNTFD
HTGDSAFDVK VGAYDITISF NKLVNVKRAA LHGSSDSRAI NSQITTTMHN NLFYTSDDQY
ALSTYDTLRR VPLMRRGQSH MFNNVFYGYR KDILSVRVGG RIAFEDNIIL NKESSSTPGD
GLKKGDDMEY YVETLLRDFR EGGLEISGSY VSFADSACNS YGASGDLTAS HGATPDMFDD
YSSASKNTIS ANRFVAGDDL TDYVFATAGK GGKAPYVSTF TAGQNSLISQ ANPVCQ
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