Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0905 |
Symbol | |
ID | 3965541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1167555 |
End bp | 1168562 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637919967 |
Product | LacI family transcription regulator |
Protein accession | YP_526379 |
Protein GI | 90020552 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.0000000824566 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACCTTGG CGGATGTGGC CGAAACTGCT GGTGTTAGCG CAATCACAGT TTCGCGTGTA ATTAATCAGC CAGATAAGGT TTCCGCTAGC ATGCGTGATA AGGTCCAAAA GGCCATCGAT AAGTTGGGCT ATATTCCCAA CCGTTCCGCA AGCGCGTTAG CCTCCGCTCG CTCTGGGGTG TTGGGGGTGG TTATTCCCTC GTTGTCCAAT GCTGTTTTTA ACGATGTGTT GCGCGGTATC TACGATGTAG CGGGCCCCGC TGGCTATCAA GTGCTGTTGG TAGATACCCA TTATTCGCCA ATGGAAGAAG AGCGCATGGT GCGCACCCTG TTAAGTCAGG CGCCAGAGGC CATGATTATT ACCGGTGGGG ATCAGACTCA GCACACCCGC AAAATGCTTG TTAAATCTGG CGTGCCCATT GTGCAGGTTA TGGAAACCGT AGAGAGCCCT ATCGATATGA ACGTAGGTTT TTCTCATCGC CAAGCAGGTT ACGATTTAGT GACGCGCTTA TTGGCTAACG GCTTTGACCG CATTGGCTTT TTGGGCGCTA GAATGGACCC GCGTGCGCAA CAGCGTATGT TGGGGTACAA GCAGGCTATG GATACCGCTG GTAGAAATTA CGATGGCCTT ATTGTAACCA CGCCTAAGCC TTCTTCTATT GCGATGGGGG GCGAGTTACT GCGCAGTGTT ATGTCTAGCA GCAACGGTGT GTGTGATGCG CTATTTGCCT GTAACGACGA CTTGGCGTTG GGGGCTTTGT TTGAGTGCCA GCGTATGAAT ATAAGCGTAC CGGGTGATAT GGCTATTTGC GGCTTTAACG ATATTGAAAC CGCGGCATTA GTCAATCCAT CTTTATCGAG CGTGCATGTG CCGCGCTACG AAATGGGCGT AACCGCAACC GAAATGGTGC TAAAGGTGTT GGCGGGTAAC GAAGTTGAAA ACAAAAAAAT CGACATTGGC TACACCATTC AAATGCGCCA ATCCACCAGC ACCGATATTC ATTGGTAG
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Protein sequence | MTLADVAETA GVSAITVSRV INQPDKVSAS MRDKVQKAID KLGYIPNRSA SALASARSGV LGVVIPSLSN AVFNDVLRGI YDVAGPAGYQ VLLVDTHYSP MEEERMVRTL LSQAPEAMII TGGDQTQHTR KMLVKSGVPI VQVMETVESP IDMNVGFSHR QAGYDLVTRL LANGFDRIGF LGARMDPRAQ QRMLGYKQAM DTAGRNYDGL IVTTPKPSSI AMGGELLRSV MSSSNGVCDA LFACNDDLAL GALFECQRMN ISVPGDMAIC GFNDIETAAL VNPSLSSVHV PRYEMGVTAT EMVLKVLAGN EVENKKIDIG YTIQMRQSTS TDIHW
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