| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0802 |
|---|
| Symbol | |
|---|
| ID | 3966401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1046281 |
|---|
| End bp | 1047426 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637919864 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_526276 |
|---|
| Protein GI | 90020449 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTTTAATA CACATGATTT AGTGTTGGTA ATTACTATTT ACCAATGCCT TTTGTTCGCG
CTCTTTTTAA TTACCTTTAA AAAAGGTAGG CGCGTAAGCA ACAATTTATT GGCGTTATTT
CTATTAGCTC ATGCGGCTAT TTCACTGGAT ATTTTGGTGT GGTTTGGCGC AGCGTTTCAT
AGCTTTATAG AGCAGCACCT ACCGAATGCG TTTTTCATTT TGCGTATTGG TCACTGGGCT
GAGGCACCGT TATTACTATT TTATGTTCGC TCGTTAGTTT ATAAAGGGCC TTTTTTCAAA
AAAACCGACT ACCTCTATTT TATTCCGTTT GCAATCGCAC TTTTAGATTA CATATTTAAT
TGGTTTATTC TCAGCCCAGA ACTGAAAGAC AACTTTCTTG CCAACTACTC ACTATCCACC
GAGTCGATTC AGTCGCGGCT AGTCTATCTA TTTAGAGAGG TTTTTCGCAC AGCATTGGGC
GTAATGTGCC TAATCGAAAT TCGTCGTTAT CAAGCACATA TAAAAAATGA ATACGCAGAC
GTAGAAGACA TAGACCTAAA ATGGCTTAAG CTATTAGTGG TAGGTTTTTT AGGTTTGCGT
ATTAGCGCCG TTGTTGTGAG CCTTTCGTTA ATATCTTTAT ATGAGTTTCA TATTCCACTC
AACACCGAGC TTATGGGACT AACGGGCAAT TATGTCTTTT TACTGTTGTT AAGCCTGCTT
ATTTATTTTA GTTTAAATAG TACACAGGTC TTTAGCGGTA TAGAAGCCAA ACACGAAGAG
CTTGCCAACG CACCGCCACC ACCTACCACA AAAGAAATTG AAGAAATAAC CCTATATATG
GCAACCCAAA AGCCGTATTT AAATCACCGC TTGCGCCTAG AGACATTCGC AAAAGGTACA
AGCCTGTCAC CACGCCGAGT ATCGTTTGTA ATAAACCGCC ATTTTGGTAA AAACTTCTTT
GAGTTTATAA ACAGCTACCG TATTCAAGAG AGTAAAAACC TACTAGCCGA CCCCAGCAAA
GCAGATCTCA CCATGCTGGA AGTAATGGCC AAGGTAGGTT TCAATAGCAA AGCCACGTTT
AACACGCTGT TTAAAAGCCT TGTTGGCCAA ACCCCTAGCC AATTTCGACG CGAGCACAGC
AAATAA
|
|---|
| Protein sequence | MFNTHDLVLV ITIYQCLLFA LFLITFKKGR RVSNNLLALF LLAHAAISLD ILVWFGAAFH
SFIEQHLPNA FFILRIGHWA EAPLLLFYVR SLVYKGPFFK KTDYLYFIPF AIALLDYIFN
WFILSPELKD NFLANYSLST ESIQSRLVYL FREVFRTALG VMCLIEIRRY QAHIKNEYAD
VEDIDLKWLK LLVVGFLGLR ISAVVVSLSL ISLYEFHIPL NTELMGLTGN YVFLLLLSLL
IYFSLNSTQV FSGIEAKHEE LANAPPPPTT KEIEEITLYM ATQKPYLNHR LRLETFAKGT
SLSPRRVSFV INRHFGKNFF EFINSYRIQE SKNLLADPSK ADLTMLEVMA KVGFNSKATF
NTLFKSLVGQ TPSQFRREHS K
|
|---|
| |