| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0788 |
|---|
| Symbol | |
|---|
| ID | 3965841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1017392 |
|---|
| End bp | 1018465 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637919850 |
|---|
| Product | aldose 1-epimerase |
|---|
| Protein accession | YP_526262 |
|---|
| Protein GI | 90020435 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2017] Galactose mutarotase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.000118587 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.618331 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA TCACAATTAC CGAAAGCCCT TTTGGCCGCC TGGATGATGG CACGCCCATT
TCGCTTTTTA CGCTAGGTAA CAGTAAAGGC ATGCGCGTGT CTGTGAGTAA TTTTGGCGGA
GTGATAACAA ATCTTTTTTG TGCCGACAAA AATGGCGAGT TTGCCGATGT GGTACTCGGT
TTCGACACGC TTGCACCTTA TCAATCACAG TCTCCGTATT TTGGTGCCCT TATTGGGCGT
TTTGGCAACC GAATTGCCAA AGGGATTTTG CCTGTGCAGA ATAAAAAAAT TCTGTTAGAT
GTAAACGATA ACGGCAATCA CCTACACGGC GGTTTATATG GGTTTGATAA AGTTACATGG
CGACCCTTTA TAGAAACCGT TGACGGAGAG CCAGCATTAG TACTGCAATA CTTAAGTCGT
GATGGCGACC AAGGTTACCC AGGTAATCTA ACCGTAGAGG TAACCTACCA GCTTACCGAT
AACAATGTGC TGTATACCCG TTATCGCGCT ACCACCGATA TGGCAACCCA CGTTAATCTC
ACTCAGCACA GCTATTTTAA TTTAATCGGT AGCCAGCACA GCGATAGCAA CGTGCTAAAT
CATCAACTAA TGATAAATGC CAACAGCATT ACTCCGGTAG GCGCAGGCCT TATACCCACC
GGCGAATTTG CCGATGTCGC TAATACCCCG TTTGATTTTC GATCGCGTAA GGCAATTGGC
AAAGATATAA ATGCCAATAA TAATCAGCTG CTACTTGGCC GTGGTTACGA TCACAACTTT
GTACTTAATA AAACGGCAGC AAAGGCGTTT GAACTGGCTG CCCGAGTAGA AGAACCAGCC
ACTGGGCGTG TATTAGAGGT AAAAACTACT GAGCCGGGTT TACAGTTTTA CTCTGGTAAT
TTTCTAGATG GTACCTTGCA AGGCAAAGGG CGAGTGTTTA ATCACCGCAG TGGCTTTTGC
TTAGAGCCGC AGCACTTTCC CGATGCGCCC AATCAGCCCA ATTTTCCGTC CACGTTATTG
CTGCCGGGTG AAGAATACAC GTCCACCATG AGTTTTGAGT TTTCAACCCT ATAG
|
|---|
| Protein sequence | MKNITITESP FGRLDDGTPI SLFTLGNSKG MRVSVSNFGG VITNLFCADK NGEFADVVLG
FDTLAPYQSQ SPYFGALIGR FGNRIAKGIL PVQNKKILLD VNDNGNHLHG GLYGFDKVTW
RPFIETVDGE PALVLQYLSR DGDQGYPGNL TVEVTYQLTD NNVLYTRYRA TTDMATHVNL
TQHSYFNLIG SQHSDSNVLN HQLMINANSI TPVGAGLIPT GEFADVANTP FDFRSRKAIG
KDINANNNQL LLGRGYDHNF VLNKTAAKAF ELAARVEEPA TGRVLEVKTT EPGLQFYSGN
FLDGTLQGKG RVFNHRSGFC LEPQHFPDAP NQPNFPSTLL LPGEEYTSTM SFEFSTL
|
|---|
| |