| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0768 |
|---|
| Symbol | |
|---|
| ID | 3966212 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 992414 |
|---|
| End bp | 993436 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637919830 |
|---|
| Product | ABC transporter permease |
|---|
| Protein accession | YP_526242 |
|---|
| Protein GI | 90020415 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.829105 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0950449 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTCCC TTTCTATTTC ACCCCATTTG CGCCGTTTTA TTTGGCCGGT ATTGGGTTTG
ATTTTTTTGC TGGCGGTAAA CCTTATTATC GCGCCTGAAT TTTTTCAGTT AGAAATAAAA
GACGGTCGTA TTTACGGCAG TTTAATTGAC GTGCTTAACC GCGCCGCGCC CGTGGCTTTG
CTCGCCATTG GCATGACATT AGTCATTGCT ACTGGCGGTG TAGATTTATC CGTAGGTTCG
GTCATGGCCA TTGCCGGTGC GGTAAGCGCA AGTTTAATTG TTGCCGGTGT AGATAGCATG
GTACTGGTGG TAGGTGCAGG TCTTACTGCT GGTGTGTTGG CTGGTTTGGT GAATGGTTTT
TTAGTCGGCT ACTTCGGCAT TCAGCCTATT GTTGCCACGC TTATTTTAAT GGTGGCTGGG
CGCGGTATTG CGCAGTTAAT TAATGCTGGT CAAATTGTTA CGTTTAGCCA CGAAGGTTTT
GCCTATTTAG GCGTGGGTTA CTTCTTAGGG TTACCGTTTC CTGTTGTGTT GGTTGTTGTA
GCGTTTTTAT TGTTTCAATT GCTCATGCGT CGCACGGCGT TGGGGTTATT TGTTGAATCG
GTGGGCGCAA ATAGCGGGGC AAGTTATTAC ATTGGTATTA ACGACAAAAT GATTAAGTTA
ATGGTGTATG CGGTGTCTGG TTTGTGTGCG GCCTTGGCAG GCATGATTGC CGCAGCCGAT
ATAGGTGGCA GCGACGCCAA CAATGCCGGT TTATGGTTAG AGTTAGATGC AATATTGGCC
GTGGTTATTG GCGGGGCTTC ATTGATGGGC GGCCGTTTTT CTATTGCGCT TTCTATTATT
GGTGCGCTCA TTATTCAAAC GTTAACTATT ACCATTATTT TAAGTGGCGT GCCGCCAAAG
TTTAATTTAA TGATTAAAGC CGCGGTGATT ATTGCCATTC TATTGTTGCA GTCCCCACAG
TTGCACCGTC AGCTATCGCG CTTTTCTCTT TCTCTTTCTC GTTCTAGTGC TGCCAGGGGG
TAA
|
|---|
| Protein sequence | MQSLSISPHL RRFIWPVLGL IFLLAVNLII APEFFQLEIK DGRIYGSLID VLNRAAPVAL
LAIGMTLVIA TGGVDLSVGS VMAIAGAVSA SLIVAGVDSM VLVVGAGLTA GVLAGLVNGF
LVGYFGIQPI VATLILMVAG RGIAQLINAG QIVTFSHEGF AYLGVGYFLG LPFPVVLVVV
AFLLFQLLMR RTALGLFVES VGANSGASYY IGINDKMIKL MVYAVSGLCA ALAGMIAAAD
IGGSDANNAG LWLELDAILA VVIGGASLMG GRFSIALSII GALIIQTLTI TIILSGVPPK
FNLMIKAAVI IAILLLQSPQ LHRQLSRFSL SLSRSSAARG
|
|---|
| |