| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0587 |
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| Symbol | |
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| ID | 3964994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 726347 |
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| End bp | 729226 |
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| Gene Length | 2880 bp |
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| Protein Length | 959 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637919650 |
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| Product | DEAD/DEAH box helicase-like |
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| Protein accession | YP_526063 |
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| Protein GI | 90020236 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor
[TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.12613 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0122478 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAA CCTACCTGTC GCATTGTATT GCGGCACTAA CCGCCACAGC GTCGTTGACT
AGCGTTAACC TGTACGCACA AGAACAGGAT GCAGCTTTAG AGGAAGTCGT TGTAACTGGC
ATTCGTTCTT CCATTTTGAA TTCTGTAGCG GTAAAACGTG ACGCAGACAC AATTGTAGAA
GTCGTGGATG CGGGCGATTT GTCTTCCCTG CCAGATGCTT CTATCGCAGA TTCTCTTGGT
CGCTTACCTG GTGTAACTAC CGTGCGCGAT TCGGGGCAAT CTTCACAGCT AAACATCCGC
GGTATGAATG GTGATTTCAT TCAAACAACA CTGAATGGCC GCGAGCAAGC TACTACTTCC
TCAGAAACAG AAAGCTTACG TTGGATGGCA TTTGATCAGT ATCCAGCGGA GCTAATCACT
CAAGCAGCGG TTTATAAGTC GCCTAAAGCA TCACTTGTTG AAGGTGGTGT AGCGGCAACC
GTTGAGTTAA AAACAGCCAA TCCATTAGAC GCGGCGCAAG ATCACAATTT CAATGTTAAA
GCCCGTCTCT CTTATAACGA CGCTGCCGAA GATGTAGGCG CCGATGCAAA CGGTAATCGT
CTGTCAGCTT CTTATATGGG TAAGTTCTTA GATGAAACTT TGGGTGTTAG CTTAGGTTTC
TCTCACTTAG ATCAACCGAA TAGTTTTACC AAAGCTCGTG CATCGGCTGA TGATCAGCTT
GGGTATGGAA CGGATGATCC TGATCCTGAA AACGGCATAT ATAGGTTGCC TGCAGCCCTT
CAATTCCAAG CTGGTTCAGG TAAAGATATC CGAGATAGTT ATATGGCAGC CGTTGTTTGG
GAGCCGAGCG ATAACCTATC CTTAAGTGTG GATTATTTTG CGACTAAATT TGAATCAGAA
GATATTCGTC ACGGTGTGAC AGTAGGGAGT CTTGGTGGAG GTGGTGCAAC ACTAACTCCT
TTAAGTGTTA ACTCTGCAGG TGAAATTGAA GACTTTGCTG TAGCGATTAC CGACCCACAT
ATTCAAAGAA AGGGTGGGAC TTGGATAGAA TCTAGAACAG AAGATCAAAG TTCTAACGCT
GATTCAACTG CTATTGGCGT TAATCTTGAG TGGGTGATCA GAGAAGGGTC GACACTAAGC
CTCGACTTCG CTGATAGTTC GGGCGAGAAA ACGCGTAAAG ATCGTTTGGC GACCATGCAT
GCGTACGAGC CATATACCAC TGGAGATGCT CGGTGGAGTG AGCTTGCAAG TCAAGGCTTT
ACTTATGAGT CGAACGGCGA TGATATTCCA ACTCTAGAGT TGACTGGCGA CATTGATTTG
ACCAGTCTTG ATCAAATGAA ATTGGGGCGC TATGAGGAGT ACCCACACCT TTACACCGAT
GACGTTCAGT CATTTAAAGT GGATTTTGTG CAAGAGGTTG AACTTGGGTT TGTCAATTCG
ATTGAGACAG GTGTTCGATT GTCCGAGCGA GTTTTCGATT CTGAGCGCGG AGCATTCTTG
TGGGGAAGCC GTGACGGTAT TTTTAACATC GGAGATGGTG AAACAGAAAG TTGGTGCGAC
GATAATCTTT CCGACCCATT TGTAGAGTGT TCCCCAATAG CGTTGGATGG CTTTGCTTCT
GTCGGTTCTG TAGAGGGCGC TCCGGACCAT TTGGTTGTGA GTATCGACGG GCTGGCTGAT
GAAATCTTTG GCGCGGGAAA CTACGAAGGG AAACAGATAT GGGCTCGCGA TTGGACATTT
GTTGAGTCTG GGGCATTAGT TGAAGATACC AAAGCATTCT ACATATTGGC GAACATAGAA
ACTCAGCTTG GAGATATACC TGTGACAGGT AACTTTGGTG TTCGTCATGT TAAAACTGAT
GTAAAAGCGC AAGGGTTAGT TTATGTCGGG AATGATGCTG GCGACACAAT TGTAGATGAT
GTTGGTAATT CCAATTCAAA TTTCGTTGAA GGTGAGTTCG GCCCAGAATT TTCGGATACG
CTTCCCTCCC TTAACTTAAA TTTTGAGCTA ACGGATAGCG ACTATGTACG TTTAGCTGCA
GCCAAAGTAT TGGGTCGCCC TCCTGTTGGT CAAATGAAAG GTGGTGCCGG TGGTTGGTTT
GATACTACCA CGGTTGATCA AGACGGAGTG CCCACAGAAG TGCCGCGCTA CAACGTCTGG
ACGAAAGGTA CGCCGTACTT GGATCCGTTC CGTGCCACTC AGCTAGATGT TTCTTATGAA
CACTACTTTG AAGATGACGG TGCTGTAACT GTAGCTGGTT TCTACAAGAA GATAGATACC
TTGGTTCAAC AGCGTAACTA TGCTCCCGGT GAAATAGATT TTATAGACTA TGGCATTACC
ATTCCTGATT CAGCACCAGA AGATACTGTT GAGGGTGCAT TCAATACTTT TGAAAATTCT
GAAGGTGGTT ACATTCGAGG TATTGAATTG GCGGGAACAA AAACGTTTAC TAGTTTGCCT
GGAGTATTCG GTGGGTTAGG TTTGACCGCG AGCTACTCGT ATACAGAGAG TGAAACAGAG
GTTGGTGGAG GAGCGCTTTC TGGAGAAACA GTCAGTCTGC CAGGGCTTTC CGAAAATGTA
TGGAGTGCTA CTGCATTCTG GGATATTGAT AACTTCAGCA CACACTTAAA CGTCCGGTCT
CGGGATGAGT ATGTTGTGAA TTTGGCCATA CCAGGTAGCT CTACCCCTGT TTTGGCCAAG
CCATATACAA CGGTGGATAT CCAAGCATCA TACGCGTTTG ATATGGGTTT AGAGGTTGTA
CTACAAGCTA ACAACTTAAC TGATGAGCCC AATAAACAAG ACTATGGCTC TTCTAGTTTA
CTAGGCGAGT ATAGCTCCTA CGGCCGTCAG TTCTACGTGG GTGTAAACTA CGCATTCTAA
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| Protein sequence | MKKTYLSHCI AALTATASLT SVNLYAQEQD AALEEVVVTG IRSSILNSVA VKRDADTIVE
VVDAGDLSSL PDASIADSLG RLPGVTTVRD SGQSSQLNIR GMNGDFIQTT LNGREQATTS
SETESLRWMA FDQYPAELIT QAAVYKSPKA SLVEGGVAAT VELKTANPLD AAQDHNFNVK
ARLSYNDAAE DVGADANGNR LSASYMGKFL DETLGVSLGF SHLDQPNSFT KARASADDQL
GYGTDDPDPE NGIYRLPAAL QFQAGSGKDI RDSYMAAVVW EPSDNLSLSV DYFATKFESE
DIRHGVTVGS LGGGGATLTP LSVNSAGEIE DFAVAITDPH IQRKGGTWIE SRTEDQSSNA
DSTAIGVNLE WVIREGSTLS LDFADSSGEK TRKDRLATMH AYEPYTTGDA RWSELASQGF
TYESNGDDIP TLELTGDIDL TSLDQMKLGR YEEYPHLYTD DVQSFKVDFV QEVELGFVNS
IETGVRLSER VFDSERGAFL WGSRDGIFNI GDGETESWCD DNLSDPFVEC SPIALDGFAS
VGSVEGAPDH LVVSIDGLAD EIFGAGNYEG KQIWARDWTF VESGALVEDT KAFYILANIE
TQLGDIPVTG NFGVRHVKTD VKAQGLVYVG NDAGDTIVDD VGNSNSNFVE GEFGPEFSDT
LPSLNLNFEL TDSDYVRLAA AKVLGRPPVG QMKGGAGGWF DTTTVDQDGV PTEVPRYNVW
TKGTPYLDPF RATQLDVSYE HYFEDDGAVT VAGFYKKIDT LVQQRNYAPG EIDFIDYGIT
IPDSAPEDTV EGAFNTFENS EGGYIRGIEL AGTKTFTSLP GVFGGLGLTA SYSYTESETE
VGGGALSGET VSLPGLSENV WSATAFWDID NFSTHLNVRS RDEYVVNLAI PGSSTPVLAK
PYTTVDIQAS YAFDMGLEVV LQANNLTDEP NKQDYGSSSL LGEYSSYGRQ FYVGVNYAF
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