| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0561 |
|---|
| Symbol | |
|---|
| ID | 3964852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 691785 |
|---|
| End bp | 692663 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637919624 |
|---|
| Product | surface lipoprotein-like |
|---|
| Protein accession | YP_526037 |
|---|
| Protein GI | 90020210 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2853] Surface lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.361173 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTACGC GAGGCGGGTT GTGGATTGTT GTGGGTTGCT TAACCCTTAT TATGGGGTGT
TCAAATGTTA AGCAAGATGT TGAGCAGGGC GACACCGGTG GTACAGCTCA ACCGGAAGCG
CAGGGCAGTG TAGCCACGCC AACAGTGAGT GAGGCGGAGC CGCCCCAAAC AGCTTATTCG
GCTAACCCTA CCGAGCCGAG TGTGGTTAGT TTTACCGACT TTAATGACCC TTTAGAAAAA
ATTAATAGGC CGATATTCAA GTTTAACCAT GCCCTATACC GCTATGCTTT AACGCCTATT
GGTAAGGCTT ACCAATACAT TCTGCCTAAA AAGGCGCGTA GCGGTGTGTC TAATGTATTT
GGCAACCTGC GTGAGCCGCT AAATTTTATA AACAACCTTC TACAATTTCG CATTGCCGAC
TCGGGCAAAA ACTTAGCGCG TTTTGGGGTT AACTCTACTG TGGGTTTATT GGGGCTATTC
GACCTCGCCG ATGCCTGGTT GGAAATAGAC GATAAAGATG CGCGCTTCTC CGATACGCTT
AGCCACTATG GTGTGGGGCA TGGTGCCTAT ATTGTTATTC CTGTGCTGGG GCCTTCCAAC
TTACGCAGTA GCACCGACTA TGCGTTCGAT TATTTTGCCC ACCCACTAAA TAATATTAGC
AATAAAAAAA CAGGGCAGGC GTTGTTGATT TATGAAGGGT TCCATAATCA GGTGCCCACC
TTAGTGAAAT ACCCCGATGT AATTGCAAAC CAGAAAAGCG CAGCAAGTGG CAAGGTAGAC
TTAGACGCAG CCTATGAATT TGTGCGCAAC TTACACCTGC AGCAAATTCA GCGCGATGCA
CAGCAGCTTC GCAACAGCAA GAAAGACGAG GGCGAGTAA
|
|---|
| Protein sequence | MFTRGGLWIV VGCLTLIMGC SNVKQDVEQG DTGGTAQPEA QGSVATPTVS EAEPPQTAYS
ANPTEPSVVS FTDFNDPLEK INRPIFKFNH ALYRYALTPI GKAYQYILPK KARSGVSNVF
GNLREPLNFI NNLLQFRIAD SGKNLARFGV NSTVGLLGLF DLADAWLEID DKDARFSDTL
SHYGVGHGAY IVIPVLGPSN LRSSTDYAFD YFAHPLNNIS NKKTGQALLI YEGFHNQVPT
LVKYPDVIAN QKSAASGKVD LDAAYEFVRN LHLQQIQRDA QQLRNSKKDE GE
|
|---|
| |