| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0559 |
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| Symbol | |
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| ID | 3964850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 684294 |
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| End bp | 687176 |
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| Gene Length | 2883 bp |
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| Protein Length | 960 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637919622 |
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| Product | TonB dependent receptor-related protein |
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| Protein accession | YP_526035 |
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| Protein GI | 90020208 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTAATT TCAAACCTAA CCTATTGTCC ATGGCCATAC TGGCGTTTGG TGCAATATCC
CTTCCTACCT ATGCTCAAGA TGCATCCAGT ACCGAGGACG CCGAAGACGC ACTTGAAGAA
GTGGTGGTAA CCGGCTTTAG ACAAAGCTTG GTTAACGCGT TAGATAAAAA ACGCGCGTCC
GATATGGTTA CCGAGCAGCT GTCTGCCGAT GACCTAGGTA GCTTACCCGA TGTATCCATG
GCCGATGCGT TAACGCGCTT GCCAGGCATT TCTGCAGTGC GCACCGGTGG CCAGGCCGCT
GAAATTAATA TTCGCGGTAT GTCTGGCGGG TTCGTATTTT CTACTTTGAA TGGTCGCGAG
CAGGTTTCCA CCAGTGGCAG CCGCAGTATT GAATTCGATC AATACCCATC AGAATTAATT
AGCTCTGCAG CTGTGTATAA GTCGCCAAAG GCGTCGCTTA TTGAGGGGGG CGTTGCGGGT
TCGGTTGAAT TAGAAACTGC TAGCCCATTA GATCTTGATC AGCAGCACAC CTTCAACGCT
AATGTCCGCT CAATGTATAA CGATCGCGCC GGTGAAATAT CTGATGCAGT TGAGTTTGGT
CATCGTTTAA GTCTTGCTTA TCAAGGTAAG TTTGCCGGCG ACACTATAGG TGTTGCTTTG
GGTTATGCGC GTTTGTATCA GCCTAGTGTA TCAACGCAAT TCGTAGGCCT AGCATACAAT
AACTTAGTTG ATGTTGATGA TGTAGAAGGT GATAACGATG GGCCAGTAAA TAACCCCGCA
GCAGAGTATG TAAGTGAAGG TATGGAATTA CAGCATCGCG GCGGTGAAGA GACGCGTGAT
GGTTATATGG CCGCTCTACA ATTCGAGCCA AATGAATCGT TCAGTTTGAA GGCTGACGCT
TTTGTATCGA AGTTTGACAC CAAGTCATTT GCTCGAGGGT TCCGTGTAAA ATTTGATGGT
GCTGCAGCGA GTATTGCCAA CGAGCAAATA CAAGATAATT TTATGGTTGG TGGCACTATT
AATCGCCGAT CAAATAGCAA TACAAGAATA GAAATTGTAA ACGACGATAA TACTGAGTTT
GATGAAGTTC AAAATTTCGG CGTTAATGCA GCTTGGCAAG TGACAGATGT ATTGAATGTT
ACTCTTGATG TGTCGAAATC CAAAGCCACA AGTGATTTTC AAAATGGATT ACTTTGGTCT
CTTGTTGCCG AAGATGCTAA TGCAGATACT CCAGTTCTAG ATCGTGATAT TTCGATTAAT
TATCAACTTA ATGGTTTGAA TCTACCCGAT GTCGGCTTTA GTCAAGCGGA TGCATTTTCT
GACATTGATA GGGTGATGGT ATCTAAGTAC GGTATTTATC CATTTGTTCA CACCGATGAA
GTTGACGCCG TTAGGCTCGA TATCAAATAT GATTTCGATA TGCCAGTACT TGCTTCTATT
GAGGCAGGTG TTCGACAGTC TAGTCGTGAA TACTCGCGCG AGCGCTCGGT ATTTGAATAC
GGTACAGATA ACAATTTTAG TGCTGCCGAA CCGCCCTTAC GCTTAACGTC AGATATGGTA
GACGTTATCG ATTGGGAAGG CGATTTCTCT CATTTTCCTA GTTATTTAGC TATCGATCTA
GATGCTGCGC TTAACGCATG GTTTCCTGAA GGCATTCCGC AACCGGTTAA AACTTGGGGC
CCGGGTGGTC CTGGTTTAGT TAACGCTGAC TCAAGTGGTG GCGATTCATA TTCATGGACA
ATGTTACAAA GTGGCAGCGT ATATGAAGAC GTATTTGCTG GTTACTTAAT GGCAAATATT
GACGCAGAGT TATTTGGAAT ACCTGTGACC GGTAATATCG GTGTGCGTAT GGTAGAAACG
GAGCAAAGAG CCACATCTCT AGATGATGTA GGTAGCGAGC CGGAACGCGG TGCGCAATAT
ATAGAAGATG ATGTTGGCTA TATTAGCAAT TTATATGCGC CTTCGATTAA AGGAACGAAA
TATACCGATT ATTTGCCGCA AATGAACTTG AACTTTTCTT TGACGGAAAA CGATCAAATA
CGAATTGCTT CTGCCAAAGT TATGTCGCGC CCCCCCATTC AGCGTTTAGC TTCTGACGCG
AGCCTGTACA TTAGTGATGA CGGTGAAATT TCAGGGAACA GTTCTAATAG TCCCTTCTTA
AAACCGTTTT ACGCTAATCA ATATGATATT TCTTATGAGC ACTACTTCGA GAATAGTGAT
GGGGCAATTG CTGTAGCTCT GTTCTACAAA GATATTGAGT CGACAGGTAT TGTTACAACA
ATTCTTCCTA ATTTTGATTT TGCTAGTGCC GGTTATGGTG TGCCATCAAA ATGGGTTAAT
CCAAATACTC TAGTTGAGAG TGCTACTACC AACGGTGATT TTGAAGTTGC ATATAATGAT
GAAGAAGGTG GTTTCGTTCA AGGCGTCGAG GTGGCTTACA CCCAAGTGTT TGATATGTTG
CCATCGCCAT TTGATGGGCT GGGAGCAAAC CTAAGTTATT CGTATACCGA AAGTGAGATA
GAGAAAGAGC GCATTTTAGG CGTTAGTACC GTTAAGCAAA CGCTAGAAGG CTTATCGAAA
AATGTAGCGT CTACAACATT ATTTTGGAAT TACAAAGATT TTGAAACGCG TGTAAGTGTT
CGATCTAGAG ATAAATTTGT TTCTGATCAA GTAGCCGTTG AATCACAAAC GGTATTCTTT
TCTGGTGAAA CCGTTATTGA TTATCAGGCT TCTTACAATA TTACAGATAA TCTCGGTGTG
ATGTTTCAAA TCAATAATCT TACTGATGAG CCAACACGCA GTTACTTTAA TACCGAAGAT
CAAACCGGCA CTATCCAGTT TTTTGGTCGG CAATTTTTCG TGGGCGTGAC TTACTCAATG
TAG
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| Protein sequence | MPNFKPNLLS MAILAFGAIS LPTYAQDASS TEDAEDALEE VVVTGFRQSL VNALDKKRAS
DMVTEQLSAD DLGSLPDVSM ADALTRLPGI SAVRTGGQAA EINIRGMSGG FVFSTLNGRE
QVSTSGSRSI EFDQYPSELI SSAAVYKSPK ASLIEGGVAG SVELETASPL DLDQQHTFNA
NVRSMYNDRA GEISDAVEFG HRLSLAYQGK FAGDTIGVAL GYARLYQPSV STQFVGLAYN
NLVDVDDVEG DNDGPVNNPA AEYVSEGMEL QHRGGEETRD GYMAALQFEP NESFSLKADA
FVSKFDTKSF ARGFRVKFDG AAASIANEQI QDNFMVGGTI NRRSNSNTRI EIVNDDNTEF
DEVQNFGVNA AWQVTDVLNV TLDVSKSKAT SDFQNGLLWS LVAEDANADT PVLDRDISIN
YQLNGLNLPD VGFSQADAFS DIDRVMVSKY GIYPFVHTDE VDAVRLDIKY DFDMPVLASI
EAGVRQSSRE YSRERSVFEY GTDNNFSAAE PPLRLTSDMV DVIDWEGDFS HFPSYLAIDL
DAALNAWFPE GIPQPVKTWG PGGPGLVNAD SSGGDSYSWT MLQSGSVYED VFAGYLMANI
DAELFGIPVT GNIGVRMVET EQRATSLDDV GSEPERGAQY IEDDVGYISN LYAPSIKGTK
YTDYLPQMNL NFSLTENDQI RIASAKVMSR PPIQRLASDA SLYISDDGEI SGNSSNSPFL
KPFYANQYDI SYEHYFENSD GAIAVALFYK DIESTGIVTT ILPNFDFASA GYGVPSKWVN
PNTLVESATT NGDFEVAYND EEGGFVQGVE VAYTQVFDML PSPFDGLGAN LSYSYTESEI
EKERILGVST VKQTLEGLSK NVASTTLFWN YKDFETRVSV RSRDKFVSDQ VAVESQTVFF
SGETVIDYQA SYNITDNLGV MFQINNLTDE PTRSYFNTED QTGTIQFFGR QFFVGVTYSM
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