| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0558 |
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| Symbol | |
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| ID | 3964849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 681811 |
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| End bp | 683808 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637919621 |
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| Product | regulatory protein, LacI |
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| Protein accession | YP_526034 |
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| Protein GI | 90020207 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGCC TTTTCGCCCC CTCTACCAAA ACCGCGCCCA TCAAATTAGC CATTACGGCA
ATAGTAGCTT CACTGTTATT ACTAAGCGGT TGCGAGAGAA CTGGCGAAAC AAGCTCAAAC
AACGTCGGCC CCTCAAGCAT TCCAATACAG CGCGTTTTTA TAGTTATAGA CCAATTTGGT
TACTTGCCAA ATTCAAGCAA AGTAGCCGTT ATTCGCGACC CGCAAGTAGG GTTCGATTCG
CACTTAAGTT TTAACCCAAG CGCTAATTTT GAGGTGGTAA GCGCAGATAC TCATGAAGTG
GTATTTAGCG GTACAGCTAC GCCGTGGAAC AACGGCAAAA CCCACAGCGG CTCGGGCGAT
AAGGTGTGGT GGTTTGATTT TAGCGGGCTG CAAACTGCGG GGGAGTACTA CGTGCGCCAC
GCCGACAGTG GCGAGAAGTC CTACCCTTTT TTAATTGATA ACAACGTATA CAAAAACGTA
CTCAAGCAAG CAGCTAGAGC GTTTTTTTAC CAGCGTGCAG GCTTTGCCAA ACAGCAGCCG
TTTGCCGATG TAGCATGGGC AGATGGCGCC AGCCACCTAG GCCCACTGCA GGATGCCAAT
GCGCGCCTAT ATAGCGCCCC CAACAACCCT GCAACCGAGC GCGATTTGCA AGGCGGCTGG
TACGATGCAG GGGATTACAA TAAATACACC AGTTGGACCG CGAACTACGT AATAGGCCTG
CTGCACGCCT ATAGCGAAAA CCCCGCCGCA TGGGGTGATG ATTTCGGCAT ACCCGAATCG
AATAATGGTG TTGCCGACAT ATTGGATGAA ATTAAATGGG GGCTAGATTG GCTAACCCGT
ATGCAAAACG CCGACGGTTC GGTGCTGTCT ATTGTGGGCT TAAGTCATGC CAGCCCCCCT
TCTGCGGCCA AGGGCCAAAG CCTTTACGGA CCAGCAAACA CATCGGCCAC GCTTACCACA
GCCGCGGCAT TTGCATTCGC GAGCAAAATT TTTGGCGAAC ACGAAAATAA AAACGTCAGC
CAGTACGCAT TGAATTTGCG CACCCGCGCA GAAAGCGCCT GGCAGTGGGC CAGCAACAAC
CCCAATGTAA TTTTTAAAAA CAATGACGCC AGCCACGGCA GCGAAGGCTT GGGCGCAGGC
CAACAAGAGG TAGACGAACA CGAACGGCAA ATGAAAAAGC TCACTGCCGC AATCTATTTA
TTTGCGCTAA CCGGCAACAG TACATACCAA CAGTATGTAG ATACCCATTA CCGCACAACC
GAATTACTAA AACACAACTT TGCCAGTGCC TTTAGAGCAG AACTTATTCG CACATTACTG
TATTACGCCC ACTTAGATGG CACGAGTAAA CAGGTTGCGC GCACTATTAC ACACACTTTT
ACCAAAGCGA TAAACGCCAA CAACGGCTGG CACGCACTTA CAAACCAGCG CGACCCGTAT
AGGGCTTACC TTGCCGATTA CACATGGGGT AGCTCTTCTA TTAAAGCCGC AAAAGGTAGC
ATGCTCTACG AACAAATTAT TTACAGTTTG GGTACACAAA GCCCACAACA GGTTAGCAAT
GCGGCGTTAG ATTATATTCA CTACCTGCAC GGCGTTAACC CGCTGGCAAA AGTGTACTTA
TCTAACATGG AAAATGACGG CGCCGAAAAT TCGGTAACCG AGTTTTATCA CACATGGTTT
AGTAACGGCA GTAAAAATTG GGACAGCACA AAAACTTCTC GCTACGGCCC TGCGCCAGGT
TTTGTAATTG GCGGCCCAAA CCCCGCCTAT AACTGGGATA CCTGCTGCCC CAACCAATGT
GGCAATAGTA ACAATAACGC GCTGTGCGGT GTTGCACCGC CTTCACCGCC ATTTAATCAA
CCTGCGCAAA AATCCTACGC CGATTTTAAT ACCAGCTGGC CATTAAACTC GTGGGAAGTA
ACAGAAAACA GCAACGCCTA TCAAACAAAT TACCTACGGC TACTATCTAA ATTTGTAAAC
AACCCTAACC ACCAATAA
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| Protein sequence | MSSLFAPSTK TAPIKLAITA IVASLLLLSG CERTGETSSN NVGPSSIPIQ RVFIVIDQFG
YLPNSSKVAV IRDPQVGFDS HLSFNPSANF EVVSADTHEV VFSGTATPWN NGKTHSGSGD
KVWWFDFSGL QTAGEYYVRH ADSGEKSYPF LIDNNVYKNV LKQAARAFFY QRAGFAKQQP
FADVAWADGA SHLGPLQDAN ARLYSAPNNP ATERDLQGGW YDAGDYNKYT SWTANYVIGL
LHAYSENPAA WGDDFGIPES NNGVADILDE IKWGLDWLTR MQNADGSVLS IVGLSHASPP
SAAKGQSLYG PANTSATLTT AAAFAFASKI FGEHENKNVS QYALNLRTRA ESAWQWASNN
PNVIFKNNDA SHGSEGLGAG QQEVDEHERQ MKKLTAAIYL FALTGNSTYQ QYVDTHYRTT
ELLKHNFASA FRAELIRTLL YYAHLDGTSK QVARTITHTF TKAINANNGW HALTNQRDPY
RAYLADYTWG SSSIKAAKGS MLYEQIIYSL GTQSPQQVSN AALDYIHYLH GVNPLAKVYL
SNMENDGAEN SVTEFYHTWF SNGSKNWDST KTSRYGPAPG FVIGGPNPAY NWDTCCPNQC
GNSNNNALCG VAPPSPPFNQ PAQKSYADFN TSWPLNSWEV TENSNAYQTN YLRLLSKFVN
NPNHQ
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