Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0537 |
Symbol | |
ID | 3968778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 657878 |
End bp | 659260 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637919600 |
Product | hypothetical protein |
Protein accession | YP_526013 |
Protein GI | 90020186 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCTTTAT CTAAGCCCCT TACACCTAAG TCCCCTACCT TTTGGAAAAG CGTGCTATTG CTTGCCCTGC CTGTTGCGCT GCAAATGCTA TTGCAATCGT TATTGGGTAT GGCCGATGTG GTAATGGTGG GAGACCTAGG GCCAGAGGCC CTCGCCGCCG TGGGCTTAGC CGCCAAATTG CACTTTTTAC TACTGGTTAT GATGAGCGGT ATTGCCGCCG GTGGCAGTGT GCTTATTGCC CAGTATTCCG GCAGTAAAAA TAGCGAGGGC TGTCGCAATA CCTTATCGGT TACGCTTGCC GTTGGTGTGG CGGTGATTAT GCCACTCGTG GCGGCTTTTG CTATTGCACC CCAGGTTTGG GTTAACTGGA TTAACCCCGA CCCCATTGTA GTGGCCATTG CTGCTGAATA TATCCAAATT ACTGCGCTGG TATTACTGCT TACCCAAATA GCGGTTATCT ATGAAGCGTC GTTGCGCGCA TTGGGCAACA CCACGGTTCC GCTTATTGGC GGGGCTGTTT CTGTTTTAGT GAATATTGCG CTTAACTACG CGCTTATTTT TGGTCATTGG GGGTTTCCTG CCATGGGCGT GGCTGGGGCG GCTTGGGCCA CACTTATAGC GCGGGCAGCT CATATGATTT TAGTAGTGGG GTGGGTTTAC GCCACGCGCC ATAGTTTTGC TTTAGGTGTG CGGGATATAT GCGCGCGGGT AGATTGGCCC AAGGTTAAGC GCTATATAGT GTTCGCCTTG CCCCTAGTGG CGAATTACAC CCTGTGGGGT GTGGGCAACG CCACTTACCA CGTGCTTACC GGTTTTGCGG GTACCGAAGC TTTGGCAATT ATGGGCGTGA TAGTACCCAT AGAAAGCCTA TTCTTTGCGT TGTTTATTGG TTTGGCTAAT GCCTCTGCGG TGCTGGTCGG GCGCGCTCTG GGCGGCGACA ACCACGACGA AGCTTGGCGG CTTTACCGGT TTTTTGACCA GCTAACTATT GGCTTGGTGG TAAGTGGCTG TTTGATATTG TGGTTAATTC GCCCTTGGGT AATAGCCATA TTCGACCAAC TAGACCCTGC TGCCGAAGCT TTACTGGCGG ATGTACTGGC TGTGTTTAGC CTGCTTATTT GGGTAAAAGT ATTAAACATG ATGCGCATAA TGGGCGTTTT GCGCGCAGGC GGTGATAACA AGTTTTGCTT GGCGGTGGAT ATTAGCGCTA TGTGGCTGGT GGGTATTCCC CTTTATGCCG CCGGTGTATT TTTTACCGCT GTGCCCTTCG CGGCTATTTT TGCGCTTATG TACTTGGAAG AAGCGCTTAA GTTTATTCCG GTGGTAATGC GTATTCGCAA GCGCTATTGG ATAAAAAACC TCGTTAAAGC CGAGGCCAAA TAA
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Protein sequence | MPLSKPLTPK SPTFWKSVLL LALPVALQML LQSLLGMADV VMVGDLGPEA LAAVGLAAKL HFLLLVMMSG IAAGGSVLIA QYSGSKNSEG CRNTLSVTLA VGVAVIMPLV AAFAIAPQVW VNWINPDPIV VAIAAEYIQI TALVLLLTQI AVIYEASLRA LGNTTVPLIG GAVSVLVNIA LNYALIFGHW GFPAMGVAGA AWATLIARAA HMILVVGWVY ATRHSFALGV RDICARVDWP KVKRYIVFAL PLVANYTLWG VGNATYHVLT GFAGTEALAI MGVIVPIESL FFALFIGLAN ASAVLVGRAL GGDNHDEAWR LYRFFDQLTI GLVVSGCLIL WLIRPWVIAI FDQLDPAAEA LLADVLAVFS LLIWVKVLNM MRIMGVLRAG GDNKFCLAVD ISAMWLVGIP LYAAGVFFTA VPFAAIFALM YLEEALKFIP VVMRIRKRYW IKNLVKAEAK
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