| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0507 |
|---|
| Symbol | |
|---|
| ID | 3965621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 620638 |
|---|
| End bp | 621819 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637919570 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_525983 |
|---|
| Protein GI | 90020156 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2152] Predicted glycosylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00187028 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATT TTAAAAACGC TGTGCAATCG TTGTTTGACG CCCATAGAGC GTTAATAAAT
AAAAAAAATA GCCCAGCGCA ATCAAATGGT ATCTACCAGC GTTGGGCCAA CCCTATTATC
ACTGCTGCCC ACGCCCCAAT TTTTTGGCGT TATGATCTTA ACGAAAGCAC AAACCCAAAG
TTGCTTGAGC GCCAAGGTGT CAATGCAACC CTAAACAGCG GTGCCATTAT GTTTAATGGC
AAATTTACGT TGGTCGTGCG AGTAGAGGGT AATGATCGCA AATCGTTTTT TGCTGTAGCG
CAAAGTGATA ACGGCGTAGA CGGTTTTGAA TTTTGGGATC ACCCCATCAC TATGCCGCAA
ACAGATCGCC CCGATACCAA TGTGTACGAC ATGCGCTTAA CTCAGCACGA AGATGGTTAT
ATTTACGGTT TATTCTGCAC CGAAAGAAAA GATTTAGAGC GTTTAGCTGA TACCTCTGCC
GCTGAGGCCC AGTGCGGCAT TGCACGCACA AAAGATTTAG TTAACTGGGA GCGCCTACCC
GATTTAATTA CCTACTCTGG CCAACAGCGC AACGTGGTGT TGCACCCAGA ATTTGTGGAT
GGCAAATACG CGCTATACAC GCGCCCGCAG GATGGTTTTA TTAGTGTTGG CGGCGGCGGC
GGTATTGGCT GGGGCTTAAC CGACAGCATG GAGCGCGCCG AAGTTAAAGA AGAAGTGATT
GTGGATGAGA AGGTATACCA CACCATAAAA GAAGTTAAAA ATGGCCAAGG CCCAGCGCCC
ATTAAAACCC CGCAGGGTTG GTTGCACCTA GCACATGGTG TGCGCAATAC CGCCGCGGGT
TTGCGTTATG TGTTGTATGT ATTTATGACA GAACTGGAGC GCCCTTGGGT TGTTACCCAT
CGCCCTGCAG GGCATTTTAT TGCGCCAGAT GGTGCCGAGC GAGTAGGTGA TGTATCGAAT
GTTGTTTTTA CTAACGGCTG GATACAAACC GACAAAGACG AGGTGTTTAT TTATTACGCT
TCATCGGATA CGCGCATGCA TGTGGCGACT AGCACCGTAG AGCAATTAGT TGACTACGCT
ATAAACACGC CCGAAGACGG TTTAACATCA GCGGCTTCGG TTGAAGCGCG CAACGCATTA
ATAGATGGCA ATTTAGCCGC GATGAAAGCG TTGGGCTTGT AA
|
|---|
| Protein sequence | MSNFKNAVQS LFDAHRALIN KKNSPAQSNG IYQRWANPII TAAHAPIFWR YDLNESTNPK
LLERQGVNAT LNSGAIMFNG KFTLVVRVEG NDRKSFFAVA QSDNGVDGFE FWDHPITMPQ
TDRPDTNVYD MRLTQHEDGY IYGLFCTERK DLERLADTSA AEAQCGIART KDLVNWERLP
DLITYSGQQR NVVLHPEFVD GKYALYTRPQ DGFISVGGGG GIGWGLTDSM ERAEVKEEVI
VDEKVYHTIK EVKNGQGPAP IKTPQGWLHL AHGVRNTAAG LRYVLYVFMT ELERPWVVTH
RPAGHFIAPD GAERVGDVSN VVFTNGWIQT DKDEVFIYYA SSDTRMHVAT STVEQLVDYA
INTPEDGLTS AASVEARNAL IDGNLAAMKA LGL
|
|---|
| |