| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0328 |
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| Symbol | |
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| ID | 3966508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 409270 |
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| End bp | 410574 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637919390 |
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| Product | ABC transporter permease |
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| Protein accession | YP_525804 |
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| Protein GI | 90019977 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.33045 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCAGTG TTAAATCAAT TAGCCACATA GAAAGCGCAC AACCAACCAG CAGCGCGGGC
ATGGATAGAA AAATTGCCAA GCCCCCACAG CGCAAAAAGC TTGTGCTGGC CGGAGGTGTG
TTACTTGGCT GCGCAGTATT GGTTGCAACA TTGCTAAGTG TAAGTGGCGG CAGGTCATTA
AATGTGGATA GCCAGCGCAT AGCCACTGGT GTAGTTAGCA AAGGTAGCTT TGAAGATTTT
ATCCCCCTGC GTGCGCGGGT AACGCCAGCC AAAACGCTTT ACTTAGATGC GGTAGAAGGT
GGGCGTGTAG AGCGAGTGCT AGTAGAAGAT GGCGCGCAAC TACAAGCGGG CGATTTAATT
GTGGAGCTTT CAAATGCGAG CTTGCAGCTA AGCGTGTTAA GTAACGAAGC GCAAGTAGCC
GAACAGTTAA ACAATATGCG CTCTATAGAA CTTAGTTTAG AGCAAAATAG GTTGCAGCAT
AAACGCAACC TCGCCGATAT AGATTATCAA ATAAAAATGC TCACGCGACA GTTGCAGGCT
GAACAAAAAT TATTAGAAAC GCAATCCCTT AGTCAATCGC AATTTGATAA TACACACGAT
ACTTTAAATT GGTACCAAGC TAGAAAGCAG CTCACCTTAG AAAGCCAAGC CTCCGATGCC
AAAATGCAAG AGGCGCAATT AATTTTTTTA CAAGAAACAA GTGAGCGTTT GCAAAATAGC
TTGGCGTTAT CGCGCCAAAA TTTAGACAAC ATGAATGTAC GTGCACCGGT AGCCGGCAAA
CTTTCTGGGT TTGATGTTGA AGTAGGGCAG AGCATTGGCC GCGGTGAACG CCTAGGGCAA
ATAGATACAC CCAATGACTT TAAGCTAAGC GCGCTTATAG ATCAGTTTTA TCTAGGCCGA
GTTGATATTG GCCAGCGGGC TAGTTTTGAA GGCTACGAAC TCACAATAAG TAAAATTTAC
CCACAAGTGC AAAACGGCCA GTTTGAAGTG GATTTTACCT TTGTAGGTGA ACAGGCTAGC
AATATTCGCA GGGGCCAAAC TATTCAATTA AAACTTGTAC TAGGCGACGC CACCGAAGCC
CTGCTAATTC CAAATGGTGC CTTCTATCAA GATACCGGCG GCAACTGGAT ATTTGTTATT
AGCCCAAATG GCGACCATGC AATAAAACGC AATGTACGTT TAGGCCGGCG CAACAGCCAA
TTTATAGAAG TGCTTGAAGG TTTAGAGGAA GGGGAGCGTG TAGTAACAAG CCCTTATAGC
AGCTATCAAG ATTTACAGAA ATTAAACTTA TCTAGTAGCG AATAG
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| Protein sequence | MSSVKSISHI ESAQPTSSAG MDRKIAKPPQ RKKLVLAGGV LLGCAVLVAT LLSVSGGRSL
NVDSQRIATG VVSKGSFEDF IPLRARVTPA KTLYLDAVEG GRVERVLVED GAQLQAGDLI
VELSNASLQL SVLSNEAQVA EQLNNMRSIE LSLEQNRLQH KRNLADIDYQ IKMLTRQLQA
EQKLLETQSL SQSQFDNTHD TLNWYQARKQ LTLESQASDA KMQEAQLIFL QETSERLQNS
LALSRQNLDN MNVRAPVAGK LSGFDVEVGQ SIGRGERLGQ IDTPNDFKLS ALIDQFYLGR
VDIGQRASFE GYELTISKIY PQVQNGQFEV DFTFVGEQAS NIRRGQTIQL KLVLGDATEA
LLIPNGAFYQ DTGGNWIFVI SPNGDHAIKR NVRLGRRNSQ FIEVLEGLEE GERVVTSPYS
SYQDLQKLNL SSSE
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