| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0309 |
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| Symbol | |
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| ID | 3968577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 381566 |
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| End bp | 382816 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637919371 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_525785 |
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| Protein GI | 90019958 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0376524 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATAG CAATTGCACG CAAAAAGCCC GCCTACGGCA AATACATTGC GCTAGGCGTA
GTTGTGCTAA CTGCACTGCT AATTGGCGTG CGTGCGCTGT GGGTTTTATC GTTGGCGGAT
TTTAGTTTGG AGCGCTCTAA ACTCACCTTT GGCCAAGTGC AACAGGGCGA CTTTACCGTT
AGCGTGCGTG GCAATGGCGT ACTCGTGCCA GAGAATATTC AATGGCTGGC AGCAGAAACA
GAGGCCACCG TAATACGACG CGTATTAAAA GCAGGCCACA TTGTAAGCAA GGGTGACCTA
ATTGCCGAGC TAGCCAACCC GCAACTGGTG CAATTACTTG CAGAAACACA GTGGGAGCTA
ACCGCAACCG AAGAAGAACT AAAAGCCGCA CAAGTTCAAC AAGAAACAGA ACTGCTTAGC
CAGAAATCGA TAGTAGAAAA CGCCAAACTT AATTTTGAAC GCAGCCAATT GGAATACGTT
GCCCAAACCG ATTTAATTAA AACTGGGGCA GTTTCTAAAA TTGCTTTTCA GCGTACCCAA
CTAGAAACCA GCCAGTTTGA ACAGCGCTGG CACACTAGCC AAGAGCAATA TTTAAAAATG
CAGCAGAATT TACTCGCGCA AAACAGAGCG CGCCAAGCTC GCCTAAGCCA AATGAAAAAT
AGATTAGAGC GCTTACAACA ACGTGTAGAT GGCTTACAGG TGCGCGCCAC ATTCGACAGT
ATTGTTTTAG ATGTACCTAT AGAAGCAGGC CAGCGCATAC AAGCGGGTGC CAATATAGCC
AAGCTTGCAC AACAAGATGC CCTGTACGCC GAACTAAGCG TACCAGAATT AAAAATAAAC
GATGTAGCGG TTGGTCAAAA AGTTTTAATT GATACACGTA ATACCGTTGT TAACGGCAAG
GTAGCGCGTA TTGATCCAAC AGTAATAAAC GGCAATGTAC AAGTAGATGT GGTTTTCACC
CAACCACTGC CAAGCGATGC ACGCCCAGAT TTAAGCGTGG ACGGAGAAAT TATTACCGCC
CATATCGAAA ATACGCTTTA CGTTACCCGC CCATTACTTT CGCAAAGCAA TAGCCGCGCT
GCGCTTTACA AAGTGCGCGA CGACAACCAA TTTGCTGAGC GAGTACACGT AAGCTTAGGT
GCCTCGTCGC CCAACCGAAT TCAAATACTC GAAGGCCTTA ACGCGGGCGA TACCATTGTT
GTGTCCGACC CTAGTCTGTT TCAAACCTAC AATATTTTTA GATTACGCTA A
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| Protein sequence | MDIAIARKKP AYGKYIALGV VVLTALLIGV RALWVLSLAD FSLERSKLTF GQVQQGDFTV
SVRGNGVLVP ENIQWLAAET EATVIRRVLK AGHIVSKGDL IAELANPQLV QLLAETQWEL
TATEEELKAA QVQQETELLS QKSIVENAKL NFERSQLEYV AQTDLIKTGA VSKIAFQRTQ
LETSQFEQRW HTSQEQYLKM QQNLLAQNRA RQARLSQMKN RLERLQQRVD GLQVRATFDS
IVLDVPIEAG QRIQAGANIA KLAQQDALYA ELSVPELKIN DVAVGQKVLI DTRNTVVNGK
VARIDPTVIN GNVQVDVVFT QPLPSDARPD LSVDGEIITA HIENTLYVTR PLLSQSNSRA
ALYKVRDDNQ FAERVHVSLG ASSPNRIQIL EGLNAGDTIV VSDPSLFQTY NIFRLR
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