| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0305 |
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| Symbol | |
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| ID | 3965444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 375603 |
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| End bp | 376949 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637919367 |
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| Product | glycine cleavage system T protein |
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| Protein accession | YP_525781 |
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| Protein GI | 90019954 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00724107 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTACCGC CACAGGCCAA TCGCAAACGC AAATCCTTCG AAGCCCAGTT AACGTTTATA
TCTTTAACTG TTTCCCTGCC GTTGCTTGGC TTACTTATAT GGGTAATGGT GTATGCAAAC
ATCTCTATAT GGTTAACGCT TATCGCCGCA TTAGTAGGTG GTTTAGCCAT ACTGGTATCG
AGCTATCGTA TTTATCAAAA AACAGAATTT CAATTTAGAA CCTTGGGCAA TTTACTCGAT
GCCATGATTC AAGGAGATTA CTCGCTACGC GCCCGCAGCG GCAGTAACGA TGGCGCACTA
TCGGATTTAA TAACCGCCTT AAATGGCTTA GCCGCAAGGT TAAGCCAACA GCGCACAGAA
TCGGTAGAAA GCCAATTTTT GGTGCGCACA GTAATTAATC ATATCGATGT TGCCATTGTA
GCCATTACCG AAAATAGTAC TTTGCGTTTT GCGAACCCCG CTGCGCAAAA ACTACTACAA
ATTAACAACG ATAAAGCAAC CTCAACGTTA ATACAGCAAC TAGCAACCGT TCAGCAGCTT
AGTAGCGGCA GCCACAAGGT AATGGAGCTA ACCCTAGGTA AAGAACAAGG TCGATTTAAT
GTACATGTGC AAACCTTTAG AGAAGACGGC CAAGAGCAAA AACTATTATT TATTACCGAT
GTACGTATGC TTTTACGCAG CGAAGAGCGT AAGGCCTGGC AAAATTTAGT GCGGGTGATA
AGCCACGAAA TAAATAACTC GCTCTCGCCC ATTGCCTCTA TAAGCCAAAC ACTAAGTAAA
CTAGTTACGA ATTGCGATGG GGCACATACT GGCTTTGCCA CCCCATTACA ACACGACCTA
GAGCAAGGAC TAACCGTTAT TAATAACCGC GCACTGGGCT TAAAGCAATT TGTAGAAAGC
TACCAAACAC TGGCAAAACT GCCCGCCCCC AAGCTTACAA TCTGCCACCT GCAAAACCTT
ATTGCCAAAT GCATCGCCCT ATTTTCTTCC CACGCTATAA TAACTAGCGG CAAGCCTGAA
CTCACCCTTA CTGCAGACCC GGCTCTACTG GAACAAGTAA TAATTAATTT ACTGAAAAAC
GCAATGGAAG TAGCGCCCGA CGGACAGATA GCTATAGATT GGCAACAGCG TGATAGCCAA
GTTCGCATTA CCGTTACCGA TGAGGGCTGC GGCATAAAGA ATTACGACAA TTTATTTGTA
CCTTTTTACA GCACCAAAAA AGGTGGCTCG GGCATAGGCT TAGTTTTATG CAGGCAAATA
ATTGAAGCGC ATGGCGGCTA TATTGCGCTT ATTAACAGGC AAGACACTAG CGGCTGCCAA
GCGATTATAG AATTACCGGC ACATTAA
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| Protein sequence | MLPPQANRKR KSFEAQLTFI SLTVSLPLLG LLIWVMVYAN ISIWLTLIAA LVGGLAILVS
SYRIYQKTEF QFRTLGNLLD AMIQGDYSLR ARSGSNDGAL SDLITALNGL AARLSQQRTE
SVESQFLVRT VINHIDVAIV AITENSTLRF ANPAAQKLLQ INNDKATSTL IQQLATVQQL
SSGSHKVMEL TLGKEQGRFN VHVQTFREDG QEQKLLFITD VRMLLRSEER KAWQNLVRVI
SHEINNSLSP IASISQTLSK LVTNCDGAHT GFATPLQHDL EQGLTVINNR ALGLKQFVES
YQTLAKLPAP KLTICHLQNL IAKCIALFSS HAIITSGKPE LTLTADPALL EQVIINLLKN
AMEVAPDGQI AIDWQQRDSQ VRITVTDEGC GIKNYDNLFV PFYSTKKGGS GIGLVLCRQI
IEAHGGYIAL INRQDTSGCQ AIIELPAH
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