| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0255 |
|---|
| Symbol | |
|---|
| ID | 3966021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 318744 |
|---|
| End bp | 320489 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637919315 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_525731 |
|---|
| Protein GI | 90019904 |
|---|
| COG category | [I] Lipid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1597] Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase
[COG2453] Predicted protein-tyrosine phosphatase |
|---|
| TIGRFAM ID | [TIGR00147] lipid kinase, YegS/Rv2252/BmrU family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.353984 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATATA AATACACACA TCTTATAAGC GTAATAATAC TTACCGCTAT TGCATTAAAG
AGTGTGCCTT TATTGCTGCT AGTACTAGCA GCTTGGATTG CGCTTGCTCT AGGTGCTGTG
GCTCTGGCCT ATAAATACAA TTGGGCAATG CTATTTCGCA AGAAAAAGAA CGGCGTAATA
CCAGCCTCTG TACGTTGGGT GTTTACCCCC TATTTAGTGG GCGTAACGCT ATACAATATT
TATATAAAAT CGAAAGATAG TGTGCCAGTT ATTCAAAAAA TAGAACCTAA TTTGTATTTA
GGGGCAAGAA TGCGCGCAGG TGAACTAGAA AACTTGCATT CGGTAAAAAT TCAAAGCGTA
TTAGATTTAA CCGCAGAATT TGACGGCCTG GGTGATTACG CGCAGGAGCA TGATATAGAT
TATTTAAATA TTCCAGTGCT GGATCACGGC TTGCCCAAAC TTCATCAACT TGTTCAAGCA
TGTCGTTGGA TAGATAAAAA CGTTAAGCGC AAGCGTTCAG TGTTAGTACA TTGTGCTTTA
GGCAGAGGTC GTTCGGTACT TGTAGTCGCT GCTTACCTAT TAGCGACTAA AAAAGCGGGT
GATGTAGAAG AAGCGCTAGA TGAAATTCGC ACAATACGTG CTACTGCTCG CTTAAACAAA
AGGCAGCATA GCGCGCTAAA TAAATGGAAA GAAGAATTGC AGCAATCCAC TATAAAAAAA
GAGCAGGCAT GGTTAATAGC CAACCCTGTT TCTGGTACCG AACAGTGGCC GAGATACAAG
CAAGATATTA TTGCACGCTT AGAAAATCAC TTTGATCTAC ATGTGGTGGA AACAAGTAAG
CAGCTAGGCG CCGATTACTG GGCTAAGCAA GCGCTTAAAG CCAAGGTTGG TCTTGTAATA
ATTAGTGGTG GCGATGGAAC TGTTGGCGAA GCAGCAAGTG TGCTAGCGAA TACAGACACC
GTAATGGGGG TATTACCCTT AGGTACGGCA AATGCCCTTA GCCACGCCAT TATAGGCTGG
CAAACAAAAA TAATACCGGT AGAAAGCGCT TGCGAAACAA TTGAATCTGG CGAGCCACGC
CGCATTGATA CAGCGCTATG TAACAAAAAA AGAATGCTAC TGGCTATGGG AATAGGCATA
GAAGCAAAAA TGATTACTGA GGCTAGCGCA GAGCGAAAGA GCAAGCTCGG ACAATTAGCC
TACATCGATG GCTTTTTTAG AGCCCTTAAG CATGGCAACG AATATAAATT AGATGTGAAA
TTTGATGATG AGCCGGTGAA GCGTATTGTT ACAAAAAGTT TAGTGGTAGC CAATGCAGCC
CCAGTTACAA CACTGCTGGC GCAGGGCAAC GGTAGCCCAA ACTACAGCGA TGGCTTTTTA
GATGTTACTT GGCTGCCTAA GGGAGGGGAA GTCGCAGATG AGGTGATGTC CCTAGGGGCG
CTAGCTTTAT CTGGTCTCTA CGAACGTCCT TTTAATGGAC ATGTGTTTCA CAAGCGCGCC
AAAAAAATAT CTATTTCTTC CCCTGGTGCC ATTCACTATG TACTTGATGG CGAACCAAAA
TGTGACCAAC AAATAACCCT TGAGCTTGAA TCGAAAAGCT TAAGAATATT TGTGCCTGTT
ACTGAGGGCA ATGAAGGCAA TGAAGCGAAT AGCGAAACAG AATATAGAGA CAACAAAGCT
CAAGCCATTG AACCCTTAAC ACCCTTGAAT AAACAAGAAC AAACCGATTC GGTTCTAGAG
CGTTAA
|
|---|
| Protein sequence | MKYKYTHLIS VIILTAIALK SVPLLLLVLA AWIALALGAV ALAYKYNWAM LFRKKKNGVI
PASVRWVFTP YLVGVTLYNI YIKSKDSVPV IQKIEPNLYL GARMRAGELE NLHSVKIQSV
LDLTAEFDGL GDYAQEHDID YLNIPVLDHG LPKLHQLVQA CRWIDKNVKR KRSVLVHCAL
GRGRSVLVVA AYLLATKKAG DVEEALDEIR TIRATARLNK RQHSALNKWK EELQQSTIKK
EQAWLIANPV SGTEQWPRYK QDIIARLENH FDLHVVETSK QLGADYWAKQ ALKAKVGLVI
ISGGDGTVGE AASVLANTDT VMGVLPLGTA NALSHAIIGW QTKIIPVESA CETIESGEPR
RIDTALCNKK RMLLAMGIGI EAKMITEASA ERKSKLGQLA YIDGFFRALK HGNEYKLDVK
FDDEPVKRIV TKSLVVANAA PVTTLLAQGN GSPNYSDGFL DVTWLPKGGE VADEVMSLGA
LALSGLYERP FNGHVFHKRA KKISISSPGA IHYVLDGEPK CDQQITLELE SKSLRIFVPV
TEGNEGNEAN SETEYRDNKA QAIEPLTPLN KQEQTDSVLE R
|
|---|
| |