| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0182 |
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| Symbol | |
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| ID | 3967966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 227410 |
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| End bp | 230211 |
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| Gene Length | 2802 bp |
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| Protein Length | 933 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637919241 |
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| Product | hypothetical protein |
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| Protein accession | YP_525658 |
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| Protein GI | 90019831 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG5099] RNA-binding protein of the Puf family, translational repressor |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.132644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATCCCT TGCCATTTAA TTCAAAGATA GTTATTTCGC TTGGTGCAAT GACGCTCGCG
CTGGCGACGC AGCAAGCTCA GGCGCTTAGT TGTACGGTTT CGGCCGACAG CTGGAATAGC
GGTTATACGG CCAATGTAAC AGTTGTCAAC GATAGTAGTT ACAGTATTAA TAGTTGGGAC
GTTACGCTTG GTTTTAATCA GCCGCCAAGC GTGAGCGCCG GTTGGAATGC GAATGTGTCT
ACTGTTGGCA CCACAGTCAT GGCCAGCAAC GTGGGTTACA ATGGAAACTT GTCGCCCGGG
CAGTCTACAT CCTTTGGTTT TCAGGGGGCT CACAACGGCA ATTTTGAATT GCCTTCTTGC
GCTGGAGGTA TGACTTCATC ATCCTCTTCT AGTTCTTCTA GTTCTTCTAG TTCTTCTAGT
TCTTCTAGTT CTTCTAGTTC TTCTAGTTCT TCTAGTTCTT CTAGTTCTTC TAGTTCTTCT
AGTTCTTCTA ATTCTTCTAG CTCGAGCAGC AGCTCGTCGA GTTCTAGTAC CAGCTCTTCT
TCCGGCAGCG GGGGCGCTAA TACAGTGACT ATTGAGCTAG AGAATTTGAG CGGCCAGAAT
GGCTTTTCAC CATTTAGCGT GCAGAATGAC AGTAGTGCCA GTGGCGGCCA GTACATCGTT
TGGCCCAATA ATGGTGACCA ACTGCTAAGC GGAGCCTCCG ATGGCCAATC TGGTACTTTG
GCAGTGTCGT TTGAATTGTC GCAAACGGCA AATGTGTCCT TCGATATAAG AGCGAGCTTG
GCAAATGGCA ATGATGATTC GTTTTATTAC AAACTTGACT CTGGTGTTTG GAGTACCCAG
AACAACACTT CTACCAGCGG TTTTGAAACT CTCTCGCCAA CTACCTTTAA CGGAGTGTCT
GCTGGTGTTC ATACTCTTTA TATTCAGCGC CGAGAAGATG GAGCTAAGCT CGATAGTCTG
AGCCTGACTG CCTCTGTGGG CAATATTATC AGCAGCCATG CTAATAGCAG TTCTAGTTCT
TCTTCCAGCG GCTCAAGTTC GTCTAGCTCT TCTTCCAGTT CAAGTGGTGG TAATGAGCTA
GTAATTGCTA TAAACGCTGG GGGCGGTGCC ACATCTCTAG ATGGTGTGAA TTTTGTAGCT
GATGTTCATT CATTGGGCGG CTCCACCGGT TCCACCACCG ACAGCATCGC AGGCGCTACT
AGCAGTACTT TGTATCAAAC AGAGCGCTAC GGCAGCTACA GCTACGCTGT TCCCGTAACT
AATGCCACTT ATTCGTTAAA GCTGCATTTT GCTGAGATTT ACCATACTGA AGCGGGGGCC
CGCTCGTTTA ATCTTGCTGT GGAAGGTCAA CAGGAGATGG CTAGTGTAGA TCTGTATTCA
CTGTCAGGGC ACGATGGTGC TTATACCTAC GAGGTGAATG ATTTCCCGGT GGATGATGGC
GAGGTTACGA TTTCGCTTGA ATCACTTACC GATAACGGCA CGCTTAGTGG TTTCGAGCTT
TCCTCCTCTG ACGGTGGTGA ATATGTGGAA CCAACACCTA TACCTACGCC AGAGCCGGGT
GAAGGCGGTC GTTACCGAGT GATTCACACC ACGGATATGG GGGCAGACCC AGACGATGAG
CAGTCGTTGG TTCGCCAGTT GGTAATGGCC AACGAGTATG ACCTAGAGGG CATTATTACG
ACAACAGGTT GTTGGAAAAA ATCCACCAGT AACACGGCCT ATGTTGACAG GATCCTCAAC
GCCTACAGCC AGGCATATCC CAATTTGAGC AAGCATGCGG AAGGATTCCC AACTCCGGCG
TATCTGGATT CCATTAATGT GATGGGGCAG CGTGGCTACG GTATGGGTGA TGTCGGCTCT
GGCAAAGACT CTGCCGGGTC CAACCTGATT ATTGCTGCAG TGGATAAAGA TGATCCACGT
CCTGTATGGG CAACTTGTTG GGGTGGATGT AATACTATTG CTCAGGCAGT GTGGAAAGTG
CAAAACACGC GCTCGCAAGC GCAATTGGAT GCTTTTATCA GCAAGTTACG TGTATACGAT
ATTCTCGGGC AAGACAATGC GGGCACTTGG CTGGCTAAAA ACTTTCCAAA CCTTATCTAC
ATTCGCGCGC GATCTGTTTA CAGCTGGCAA CCCTCTGATA GTTATCTGGA TAATCACATT
CAGAGTCACG GTGCACTGGG TGCTGTATAC CCAAATCGTC GATATGCAAC AGAGGGGGAT
ACACCAGCAT TTCTGCATAT GGCTAATCCG GGATTGAACG ACCCATCAGT GGTTTCCATG
GGGGGCTGGG GTGGGCGTTT CCCTAGCAAA CAAGCTGGTG TACGTGGTAT GTCGTGCATG
AGTGGTGAAG ATGCCGTCTA CGATACCTAC TACATGTATA CTGAGAATGG CGAATCCATT
AAGCGGTGGA GCACTGCAAT TCACAACGAC TTTCAGGCAC GTATGGATTG GGCCATTGAG
AGTAACTATT CTGCAGCGAA CCACCACCCA GTACCCGTTG TTAATAATGA TGCTAACGAG
GCAGTAATGT ATCTCAATGC GTCTGCGGGT TCGACAGTTT CGCTGGATGC TAGCGGCTCG
AGTGACCCGG ATGGAGATAG CCTTAATTAT TCGTGGTCTC ACTACGGCGA AGCGGATTCT
TACAGTGGTT CCGTGAGCAT TAGTAATAGT AGTTCAGCCA GCGCCAATGT TCAGATTCCG
TCGAATGCTG GTGGGAAGGA TATCCACATT TTGCTAACCC TGCGTGATAA CGGTTCCCCT
AACCTCTATG CCTACCGCCG CGTGGTTATT AACGTGCAAT AA
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| Protein sequence | MYPLPFNSKI VISLGAMTLA LATQQAQALS CTVSADSWNS GYTANVTVVN DSSYSINSWD
VTLGFNQPPS VSAGWNANVS TVGTTVMASN VGYNGNLSPG QSTSFGFQGA HNGNFELPSC
AGGMTSSSSS SSSSSSSSSS SSSSSSSSSS SSSSSSSSSS SSSNSSSSSS SSSSSSTSSS
SGSGGANTVT IELENLSGQN GFSPFSVQND SSASGGQYIV WPNNGDQLLS GASDGQSGTL
AVSFELSQTA NVSFDIRASL ANGNDDSFYY KLDSGVWSTQ NNTSTSGFET LSPTTFNGVS
AGVHTLYIQR REDGAKLDSL SLTASVGNII SSHANSSSSS SSSGSSSSSS SSSSSGGNEL
VIAINAGGGA TSLDGVNFVA DVHSLGGSTG STTDSIAGAT SSTLYQTERY GSYSYAVPVT
NATYSLKLHF AEIYHTEAGA RSFNLAVEGQ QEMASVDLYS LSGHDGAYTY EVNDFPVDDG
EVTISLESLT DNGTLSGFEL SSSDGGEYVE PTPIPTPEPG EGGRYRVIHT TDMGADPDDE
QSLVRQLVMA NEYDLEGIIT TTGCWKKSTS NTAYVDRILN AYSQAYPNLS KHAEGFPTPA
YLDSINVMGQ RGYGMGDVGS GKDSAGSNLI IAAVDKDDPR PVWATCWGGC NTIAQAVWKV
QNTRSQAQLD AFISKLRVYD ILGQDNAGTW LAKNFPNLIY IRARSVYSWQ PSDSYLDNHI
QSHGALGAVY PNRRYATEGD TPAFLHMANP GLNDPSVVSM GGWGGRFPSK QAGVRGMSCM
SGEDAVYDTY YMYTENGESI KRWSTAIHND FQARMDWAIE SNYSAANHHP VPVVNNDANE
AVMYLNASAG STVSLDASGS SDPDGDSLNY SWSHYGEADS YSGSVSISNS SSASANVQIP
SNAGGKDIHI LLTLRDNGSP NLYAYRRVVI NVQ
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