| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0181 |
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| Symbol | |
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| ID | 3967965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 225639 |
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| End bp | 227363 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637919240 |
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| Product | Beta-1 4-xylanase-like |
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| Protein accession | YP_525657 |
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| Protein GI | 90019830 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3693] Beta-1,4-xylanase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGT TAATTAAGCC TACGCTATCG TGGGTTGCAG GAGTTGCTTT GTCGCTGGGT
ATTGCCCAGG GAGCTGGTGC TCAAAATGTG CAGTTTGTTG GTAATATCAC TACCAATGGT
AGTGTGCGCA ACGACTTCAT GGACTACTGG GATCAGATTA CCCCAGAGAA TGAAGGCAAG
TGGGGCTCGG TGGAGCGCAG TCGCGACAAC TATTCATGGA GCGGCCAAGA TGCCGCCTAC
AATTTTGCCC GTGCCAACGG CATCCCATTT AAAGCACATA CTTTAGTATG GGGCAGTCAA
TATCCCAGCT GGATAAACAA TTTAAGTAAC GCGGAAAAAG CCGCTGAGAT TGAAGAGTGG
ATTCGCGATT ACTGTAACCG TTACCCAGCC ACCGATATTA TCGATGTTGT CAATGAAGCA
ACGCCGGGCC ACGCGCCAGC AAATTATGCT CGCGATGCAT TTGGCGACAA CTGGATAATC
AAGTCCTTCC AGCTGGCACG TCAGTACTGC CCCAATGCCA CGTTAGTGTT GAACGACTAC
AACGTACTTA TTTGGAACAC CAATGATTTT ATAGCGATGG CCCAGCCGGT AATTAACGCC
GGAGTAGTAG ATGCTTTGGG TTTGCAGGCC CACGGTCTGG AGAGCCTTTC TGCGTCGCAA
TTAAAATCGA CTCTGGATCG TATCGCCAAT TTGGGTTTGC CAATTTATAT CTCTGAATAC
GATGTTCGCA GCACCAATGA TCAGGAGCAG CTGCGTATTA TGCGTGATCA ATTCCCTGTA
TTTTACAACC ACCCAAGTGT ACGTGGCATA ACTTTGTGGG GTTATATGGT GGGGGCCACC
TGGCGAGAAG GCACAGGTTT GATTCGTGCT GATGGCTCCC ATCGTCCAGC GATGACCTGG
TTGATGAACT ATCTGGAGAA CAATCGTGGC GGCTCAACCT CTTCAAGTAG TTCATCCTCC
TCTAGCAGTT CGTCTTCCAG TAGTTCTTCT TCGGGAAGTT CCTCTGGTGG CCCAAGTAGT
TTGACGGTAG AGCTAGAATC TTTGTCGGAT AGCAGTAACT TTTCGCCATT CTCGGTACAG
AGTGACAGCA GCGCAGCGGG CGGCCAGTAC GTGGTATGGC CTAACAACGG CAATCAGATT
GTAAGCTCAC CCTCCGATAG CGCCAGCGGG CAAATTCAGG TGCACTTTAC CCTGTCGCAA
TCGGCGGATG TGCAATTTCA GATTCGTGCA GACCTAGCTA ACGGCAATGA CGACTCTTTT
TATTACAAGC TGGACTCAGG CTCTTGGAAT ACTCAGAACA ACGCTTCCAC GTCTGGTTGG
GGCACCTTAA CCCCAGCAAC TTTCTCTAAT GTATCCACAG GATCCCATAC CTTACACATT
CTCCGCAGAG AAGATGGGGC GAAACTCGAT AAGGTAACTC TGAATGCTTC AGTTGGTCAG
GTTTCCGCTA GTACAGGCAG TAGCTCCAGC TCTTCCAGCA GCTCCAGTTC ATCCAGCAGT
TCTAGTTCTT CAAGCAGCAG CGGCGCGGCA GTCGCAAGTT GTGACGGTGT TAATGAATAC
CCCAGCTGGA CAGCAAAAGA TTGGTCTGGG GGTGACTATA ACCACGCCAA TAGCGGTGAC
TACATGAGCT ATCAGGGTGT TCTATATCGA GCAAACTGGT ACACCGCAAC TGTTCCTGGA
AGTGATTCTT CCTGGACTCG AGTTGGCGAT TGCAATTTTG TGTAA
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| Protein sequence | MKKLIKPTLS WVAGVALSLG IAQGAGAQNV QFVGNITTNG SVRNDFMDYW DQITPENEGK
WGSVERSRDN YSWSGQDAAY NFARANGIPF KAHTLVWGSQ YPSWINNLSN AEKAAEIEEW
IRDYCNRYPA TDIIDVVNEA TPGHAPANYA RDAFGDNWII KSFQLARQYC PNATLVLNDY
NVLIWNTNDF IAMAQPVINA GVVDALGLQA HGLESLSASQ LKSTLDRIAN LGLPIYISEY
DVRSTNDQEQ LRIMRDQFPV FYNHPSVRGI TLWGYMVGAT WREGTGLIRA DGSHRPAMTW
LMNYLENNRG GSTSSSSSSS SSSSSSSSSS SGSSSGGPSS LTVELESLSD SSNFSPFSVQ
SDSSAAGGQY VVWPNNGNQI VSSPSDSASG QIQVHFTLSQ SADVQFQIRA DLANGNDDSF
YYKLDSGSWN TQNNASTSGW GTLTPATFSN VSTGSHTLHI LRREDGAKLD KVTLNASVGQ
VSASTGSSSS SSSSSSSSSS SSSSSSSGAA VASCDGVNEY PSWTAKDWSG GDYNHANSGD
YMSYQGVLYR ANWYTATVPG SDSSWTRVGD CNFV
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