| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0180 |
|---|
| Symbol | |
|---|
| ID | 3967964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 223457 |
|---|
| End bp | 224593 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637919239 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_525656 |
|---|
| Protein GI | 90019829 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.34579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAATT TTTACAAACA AATCACGGCT TATTTTTTCG TAAAATTACT GCTAAGTTTT
GCTGTTATTT TTCTTGCCTA TCATTTTATG GAGGTAAGCA TACCGCTGCT ACCAAAAGAA
AAAAGTCCCT ATGCATGGTC GCTTAGGGCT TTTTCAGATC AACTGCTTGG CGGAAAATCC
ACAGTGACGT TTCTGGGCGA CAGTCGCTCT ATTTACTATC GCTATCAAGT AAATACTGCC
GTAAAATTCC CTTTCGCAGG CGCTCGCCTT ACCTTCGAAA AACTAGAAGA CCTTAGTCGC
TACACGGCTG TTTCTTTTAC CTCTCAGTGT GATAAATACA ATGTTATGAC ATTTCACATA
CACAGCTTTG ATGCCCATAT TACGAAAGAC GATGACTTCT ATAGCTACCG CTTTGCCGAA
AAAGATTTTA CTTGTGAAGC AACTAAAAAT CAGCACATCA TTGATTTAAA GTATTTAAAT
GTACCAGTCT GGTGGTTAAA ACAAAATAAT ATACCAGTAT CCGATACACA TTATAGGTTG
GACAAAACAC GAGCTCTATC GTTCGATAAC GACCATCGAG GGCCACTAGG AATTCCCTTG
CACACACATA TCGAAAATTT AACATTGCAC TATCAGGATT GGCGATACAT TTGGTTAGCT
ATTGGGTTAT TAACTGTAAC TTGGCTAATT TTTTTAATTT ATTGGTTAAA GCGTTATAGT
CGGTGTTTGG TATCGACAGT GAAAATGAAT ATCGCGGAAA ATAAACCGTT CATCGCCTAT
CAACAACTAT CACTGGAACC CCACCGAGAT AGAGAAAAAA CAGAGTTGTT ACGATTCATG
GGTTTAGAAT TTACCAACCC GGAAATGAGC CTGGAATATA CGGTTAAAAA CCTCGGTCTT
AATCGAACAA AAATAAATAA TTTATTAAAA GAAGAGTTGG GACTTACGTT TACAGCTTAT
CTGAATAAAT TGCGCTTGGC AGAGGCATCA AAACTAATTT CCAATCGGGA AAACAGAAAT
ATATCCGAAA TCGCATTTTC TGTAGGCTTT AATAACATTT CCTATTTCAA TAGGCTATTT
AAAAATGAGT TTGGCTGTAC CCCTAAAAAA TTCGAATCGA TATCAAAAGA TAGATAA
|
|---|
| Protein sequence | MLNFYKQITA YFFVKLLLSF AVIFLAYHFM EVSIPLLPKE KSPYAWSLRA FSDQLLGGKS
TVTFLGDSRS IYYRYQVNTA VKFPFAGARL TFEKLEDLSR YTAVSFTSQC DKYNVMTFHI
HSFDAHITKD DDFYSYRFAE KDFTCEATKN QHIIDLKYLN VPVWWLKQNN IPVSDTHYRL
DKTRALSFDN DHRGPLGIPL HTHIENLTLH YQDWRYIWLA IGLLTVTWLI FLIYWLKRYS
RCLVSTVKMN IAENKPFIAY QQLSLEPHRD REKTELLRFM GLEFTNPEMS LEYTVKNLGL
NRTKINNLLK EELGLTFTAY LNKLRLAEAS KLISNRENRN ISEIAFSVGF NNISYFNRLF
KNEFGCTPKK FESISKDR
|
|---|
| |