| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3938 |
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| Symbol | |
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| ID | 3961578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4402803 |
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| End bp | 4405223 |
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| Gene Length | 2421 bp |
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| Protein Length | 806 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637918763 |
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| Product | putative GAF sensor protein |
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| Protein accession | YP_525168 |
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| Protein GI | 89902697 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCCG TGATTAAACC GGTCAGTGGC GAGAGAAATT CCGAGCAGGT TTTTTTTGAA
TCACAAAAGC TGCCCAGCGA GAAACGGGGC ATGCTGTTTG AAGCCCTGTT TTACAAGCAG
TTGCAACAGG TTACCACCCG GATCCACGAA ACCGAGAATC TGGAGCAGAT CATGCTGGAG
GCGAGCCAGG ATATCTGCAA ACTGTTCAAT GCCGACCGTC TGACTCTTTA TGCCGTCAAT
GAGGACCAGA GTGCCATTGT CTCCAAGGTC AAGACCGGGC TCAACAGCAG CCGGGACCTC
AAGTTGCCGA TCACGCCCCA AAGTATTGCC GGTTACGTTG CCTTTAGCCG ACGACTGCTC
AACCTGCCCG ACGTCTATGA CGACGACGCG CTCAAGCAAA TACACCCGGC CCTGACCTTT
CTCAAGGAAG TGGACAAACG ATCGGGCTAC CGAACGCGGC AGATGCTGGT GGCCCCTATT
CTTGAAGGCA AGACGCTTTA TGGCGTGCTG CAGGTCATCA ACAACAAAAA CGATCAGCCC
TTTGGAGAGC TTGAAGTGGA AGGCGTGTCG CAACTGTGCA AAACACTGGG CACCGCCATT
CGGCAACGGA TCCAGAAGGC GGAAGCGAGC GCGCGGCGCA TGGCCACCAA ATACGATGGT
TTGGTCGCCG ACGGTGTGAT GTCGGCGCAG GAGCTTGAGC ATTGCCTGCA GCAGGCGCGC
GTCGAGGGCA AGTCGGTGGA GCAGGTCTTG ATCACGCAGT ACCAGGTCCG GCCAGCCCAG
ATTGGCCCCT CACTGGCCAA GTTTTTTGGC GTGCCCTATG AGCCCTTCAG TGCGGGGCGC
ATCCGCTCGG AGATGCTGCA TGGTCCGCTC AAGCGCGAGT TCATTGAACA GCAGGGGTGG
ATACCGCTGG AGGAGTCGCC CGATGGCCTG GTCATCATGT GTGTGGACCC CGAGGCGGCG
CTCAGCTCGC GCGTGGTGCC GCAGGTATTT CCCCGCATCA TCAGATTCTC CTACCGGGTC
ACAACGCAAA CCGAATTTGC CGATACTTTG GGTCAGATCT TCGGTCTGGA AGCGGCGGGC
GGGTCGATCG ACGAGTTGCT GGCTGACATG GACGGCGGGG CCATTGACGA CGGCAGCAAT
GACGACTCGC TGGAGTCGGC GGCGGCTGAC AACGAACTCG TGAAGTTCGT CAACAAGGTC
ATCATTGACG CCTACAAGCA GGGTGTGTCC GATATTCACA TTGAGCCGAT GCCGGGCAAG
CTTAAAACCG GCATCCGATT CCGCATCGAT GGCACGCTGC AGCCGTATAT CGAGGTTCCG
GCCCATTTTC GCCAGGCCAT GGTGACCCGT TTGAAGATCA TGTGCGACCT CGACATTTCA
GAGCGCCGCC GGCCCCAGGA CGGCAAGATC AAGTTTAAAA AATACGGTCC GCTCGACATT
GAACTGCGGG TGGCCACCAT ACCGTCCGCT GGCGGGGTGG AAGACGTGGT GATGCGGATT
CTGGCCGCCG GGGAGCCGAT CCCCATGGAC AAGCTGGGCC TCACCCCGCA CAACATGGAG
CGCGTCATTC GCACCGTCGA GAAGCCGTAC GGCTTGTTTT ACGTGTGCGG CCCGACCGGC
TCGGGCAAAA CCACCACGCT GCACTCCATC CTCAAGCATC TCAACACGCC CGACACCAAA
ATCTGGACGG CCGAAGACCC GGTGGAAATC ACGCAAAAAG GACTGCGCCA GGTCCAGATC
AACCGCAAAG CCGGCATCGA CTTTGCGCTC ATCATGCGGG CCTTCTTGCG CGCCGACCCC
GACATCATCA TGGTCGGCGA GTCGCGCGAC AAGGAAACGG TGGCGATGGG CATCGAAGCG
TCGCTCACCG GCCACCTGGT GTTCTCGACC CTGCACACCA ACTCGGCGCC GGAATCCATC
ACCCGCCTGC TGGACATGGG CATGGACCCC TTCAACTTTG CCGATGCGCT GTTGGGCATT
CTGGCGCAGC GGCTGGCCAA AAAGCTGTGT GACTGCAAGG AAGCCTATGT GCCCGATGCC
GAAGAGCTGC GCCTGTTTGC GGCCGAATAT TCTGATGAGC TGCGGCACTC GCAAGCCTGG
GCGGCCGACT ATGAAGGTGA AACCGATAGA TTGATCGCGA GCTGGCACCG GCAATACGAT
CAGGACGGCC AACTGCGGTT TTACCGCCAT GTAGGCTGCG ACAAGTGCCA CAACACCGGC
TACAAAGGCC GCATCGGCCT GCATGAGCTG CTGATCGCCG ACGACGGCAT CAAGAAACTG
ATCCAGGAGC GTGCCCGCGT CGCCGAGATT TTTGCCGCCG CGGTGGAAGG CGGCATGCGG
ACCTTGAAGA TGGACGGCAT GGAGAAAATC ATGATGGGCC TGACCGACAT CAAGATGGTC
AGGTCGGTGT GCATCAAGTG A
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| Protein sequence | MSAVIKPVSG ERNSEQVFFE SQKLPSEKRG MLFEALFYKQ LQQVTTRIHE TENLEQIMLE
ASQDICKLFN ADRLTLYAVN EDQSAIVSKV KTGLNSSRDL KLPITPQSIA GYVAFSRRLL
NLPDVYDDDA LKQIHPALTF LKEVDKRSGY RTRQMLVAPI LEGKTLYGVL QVINNKNDQP
FGELEVEGVS QLCKTLGTAI RQRIQKAEAS ARRMATKYDG LVADGVMSAQ ELEHCLQQAR
VEGKSVEQVL ITQYQVRPAQ IGPSLAKFFG VPYEPFSAGR IRSEMLHGPL KREFIEQQGW
IPLEESPDGL VIMCVDPEAA LSSRVVPQVF PRIIRFSYRV TTQTEFADTL GQIFGLEAAG
GSIDELLADM DGGAIDDGSN DDSLESAAAD NELVKFVNKV IIDAYKQGVS DIHIEPMPGK
LKTGIRFRID GTLQPYIEVP AHFRQAMVTR LKIMCDLDIS ERRRPQDGKI KFKKYGPLDI
ELRVATIPSA GGVEDVVMRI LAAGEPIPMD KLGLTPHNME RVIRTVEKPY GLFYVCGPTG
SGKTTTLHSI LKHLNTPDTK IWTAEDPVEI TQKGLRQVQI NRKAGIDFAL IMRAFLRADP
DIIMVGESRD KETVAMGIEA SLTGHLVFST LHTNSAPESI TRLLDMGMDP FNFADALLGI
LAQRLAKKLC DCKEAYVPDA EELRLFAAEY SDELRHSQAW AADYEGETDR LIASWHRQYD
QDGQLRFYRH VGCDKCHNTG YKGRIGLHEL LIADDGIKKL IQERARVAEI FAAAVEGGMR
TLKMDGMEKI MMGLTDIKMV RSVCIK
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