| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3877 |
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| Symbol | |
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| ID | 3961479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4328256 |
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| End bp | 4329392 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637918702 |
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| Product | twitching motility protein |
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| Protein accession | YP_525107 |
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| Protein GI | 89902636 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0828189 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACGCG ATCAAGCCAC CAAATTCATC AACGATCTGC TCAAGCTGAT GATCAGCCGC
AACGGCAGCG ATTTGTTCCT CACGGCCGAT TTTCCGCCCG CCATCAAGGT GGACGGCAAG
GTCACCAAGG TCTCGCCCCA AGCGCTCACC GCGGCGCATA CCCTGTCGTT GGCGCGCTCC
ATCATGAGCG ACAAGCAGGT GGCCGAGTTT GAACGCACCA AAGAATGCAA CTTTGCCATC
GCACCGCCCG GTGTTGGCCG TTTTCGCGTC AGCGCCTTTA TCCAGCAGGG CCGGGTTGGC
TTGGTGCTGC GGGTCATACC GCTGAGCGTG CCCACTATTG ATGGTTTGGG TGTGCCCCCG
ATACTCAAGG AAGTGGCCTC TGCCAAGCGC GGTTTGTGCA TTTTGGTGGG AGCTACCGGC
TCCGGCAAAT CGACCACCCT GGCCGCGATG GTTGACTGGC GCAACGAAAA CTCGTTTGGT
CACATCATCA CGGTTGAAGA CCCGATTGAG TTTGTGCATC AGCACAAAAA CTGTGTGGTG
ACCCAGCGCG AGGTCGGCAT CGACACCGAC AGTTGGGAAG CGGCGCTCAA AAATACCCTG
CGCCAGGCGC CCGATGTCAT TCTGATGGGC GAAATTCGCG ACCGCGAAAC CATGGAACAT
GCGGTCGCGT TTGCCGAGAC CGGGCATTTG TGTCTCGCCA CCTTGCACGC CAACAGCGCC
AACCAAGCGC TGGACCGGAT CATCAATTTC TTCCCTGAAG AGCGCCGCGC GCAGTTGCTG
ATGGACTTGT CGCTCAACCT GAAGGCGCTG GTGTCGCAGC GGCTGATCCC GAAACAGGAT
GGTCGCGGGC GCTATGCGGT GGTCGAGATC ATGCTCAACA CGCCGCTTAT CTCCGACATG
ATCTTCAAGG GCGAAGTCTC CGAGATCAAG GAGATCATGA AGAAAAGCCG CAACCTGGGC
ATGCAGACTT TCGACCAGGC CTTGTACGAC GCCTACGAAG CCAACCTGAT CACCTACGAG
GACGCCCTGC GCAACGCCGA TTCACTCAAT GACCTGCGCC TGCAGATCAA GCTCAACAGC
CATCGCGGCA AAGCCCAGGA CCTGAACGCC GGTACCGAAA ATTTCTCCAT CGTTTAA
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| Protein sequence | MERDQATKFI NDLLKLMISR NGSDLFLTAD FPPAIKVDGK VTKVSPQALT AAHTLSLARS
IMSDKQVAEF ERTKECNFAI APPGVGRFRV SAFIQQGRVG LVLRVIPLSV PTIDGLGVPP
ILKEVASAKR GLCILVGATG SGKSTTLAAM VDWRNENSFG HIITVEDPIE FVHQHKNCVV
TQREVGIDTD SWEAALKNTL RQAPDVILMG EIRDRETMEH AVAFAETGHL CLATLHANSA
NQALDRIINF FPEERRAQLL MDLSLNLKAL VSQRLIPKQD GRGRYAVVEI MLNTPLISDM
IFKGEVSEIK EIMKKSRNLG MQTFDQALYD AYEANLITYE DALRNADSLN DLRLQIKLNS
HRGKAQDLNA GTENFSIV
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