| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3814 |
|---|
| Symbol | |
|---|
| ID | 3960069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 4252867 |
|---|
| End bp | 4259163 |
|---|
| Gene Length | 6297 bp |
|---|
| Protein Length | 2098 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637918640 |
|---|
| Product | excinuclease ABC, A subunit |
|---|
| Protein accession | YP_525045 |
|---|
| Protein GI | 89902574 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCAGG GAATCATCCG TATTCGCGGT GCGCGCCAGC ATAACCTCAA AAACCTGGAC
CTCGACATCC GCACTGGCGA GCTCACGGTG GTGACCGGGC CCAGCGGTTC GGGCAAGTCG
AGCCTGGTGT TTGACACCCT GTTTGCCGAA GGCCAGCGGC GTTATGTGGA AACCTTCTCC
GCCTATGCGC GCCAGTTTCT GGATCGCATG GACAAGCCCG CTGTGGACAA GGTCGAAGGC
GTGCCGCCGG CGATTGCGAT TGACCAGACC AACCCGGTGC GCTCCAGCCG CTCCACGGTG
GGCACGATGA CCGAGCTCAA CGACCATTTG AAGCTGCTGT TCGCCCGCGC TGGGGCTTTG
TTTGACCGGG TCACGGCGCA GCCGGTGCGC CACGACAGCC CCGAGACGAT TTACGCGCAG
CTGCTGGAGC GCTCAGCGCA GGCGAATACC CGCCTGGCCA TTACCTTCCC GGTTGAATTG
CCGGCCAGTG CCACGCCGGA GGAGGTGGCG CAGTGGTTGT CGGTGAGCGG CTTTACCAAG
GTGCAGGCGG AGCGCGATCT TGAGGTGGAG GCAAGCCCGG CTGTCGGTCA CAAAAAGCCC
GGCAAAGCCG CCCCGGAACC GGCATCCAGG CGCAAAGTGC TGGACGTGGT GGCGGACCGG
TTCAGGCTGG CTCACGCCGA GCGCGCGCGT GTGCTGGAGG CGATTGAGGT GGCGCTCAAG
CACGGCAGCG GGCGGATCAA CGTTTATGTG CTTAATGAGC CGCAAGCCCC CGATATTCAA
GGGAGTTTGG CTACAGATTC GATAGTAAAT TCGGTCCCTG AGATCTGGCG CTTTTCCACC
GGCCTGCATT GTCCCGAGAG CAACTTGCGC TACACCGACC CGATCGCGTC GATGTTTTCT
TTCAACTCCG CCGTGGGTGC CTGCGATGCC TGCCGCGGTT TTGGCCGCGT CATTGGAGTC
GACTACGGGC TGGTGATTCC CAATGACAAG CTGACCTTGC GCGCCGGCGC CATCAAGCCG
ATGCAGACCC CCGCCTGGCA GGAGGCGCAG GACGATTTGA TGCGCCACGC GGAAGGCGCC
GGCATTCCGC GCGACACGCC CTGGTACAAG CTCACGCCCG AGCAGCAGCA TTGGGTGATC
GATGGCTCCC CCAACTGGAA TGGCAAGTGG AACCAGCACT GGTTTGGCAT CAGGCGTTTT
TTTGAATACC TGGAAACCAA GTCCTACAAA ATGCACATCC GCGTGCTGCT GTCCAAGTAC
CGCAGCTACA CGCCATGCCC GACCTGCGGC GGTGCGCGGC TGAAGACCGA GAGTCTGCTG
TGGCGCATGG GCAGCAAGGC CGATGCCGAT AAGGTTTTGG ATCCGGCCAA GCGGTTTATG
CCGGCGGGCG TCAAGTGGTC GCGTGAGCAG TTGGAGGCCC TGCCGGGCCT GTGTTTGCAC
GACTTGATGT TGTTGCCGCT GGACCGGGTG CGACGCTTCT TCGATTCGAT GCAAGCTCGG
CTTGGGGTGT CGGAGCGCGC CGCGCCGGAA ACAGCCGGGG AACCCGGTTT GTCTGTGGCG
GTGGTGACTT CTGAGGCTGA TGCCAAGACC CTCAAACTGC TGTTCGAGGA AATCAGCACG
CGCCTGAAGT ACCTGTGTGA GGTGGGCATT GGCTACCTCA CCCTGGACCG GCAAAGCCGC
ACCCTCAGCG GTGGCGAGGT CCAGCGCATC AACCTCACCA CCGCCTTGGG CACCTCGCTG
GTCAATACCC TGTTTGTGCT GGACGAGCCC AGCATCGGCT TGCATCCGCG TGACATGCAC
CGCATCATCG TGGCCATGCA GCGCCTGCGT GACGCGGGCA ACACGCTGGT GGTGGTGGAG
CACGACCCGG CGGTGATGCT GGCGGCCGAC CGCATGATCG ACATGGGGCC CGGGCCGGGC
GAGCGCGGCG GGCAAATCGT GTTTGACGGC AGCACCGCTG ATTTGCGCCA CGCCGACACC
CTCACCGGCG CTTACCTGGG CGGGCGCAAG CAGGTCGGCC TGGGCTTCCA GCGACTAGTG
GCCGCCAACA CCCCACGCCT GATTCTGGAA GGTGCACGCG AGCACAACCT GAAAAACGTG
GGCGTCGAAT TTCCGCTGCA GCGCCTGGTG TGTATCACCG GGGTCAGCGG CTCCGGCAAG
TCAACCCTGA TCCAGGACAT CCTGGCGCCG GCGCTGAAAC GGCATTTTGG CAAGCCGTCC
GAGGCCCCGG GCGCCTTTGA GCGCCTGCTG GGCGCCGAGC AACTCAGTGA CGTGGTCTTT
GTGGACCAGT CCCCGATTGG CAAGACCGCA CGCTCCAACC CGGTGAGCTA CGTCGGCGCC
TGGGATGCGA TCCGTGAGAT TTTTGCCAAT GCGCCGCTGT CGCGCCAGCG CGGCTACACC
GCGTCCAAAT TCAGCTTCAA CAATGGCGAC GGCCGCTGCG CCACCTGCGG CGGATCGGGC
TTCGAACATG TGGAAATGCA GTTCTTGAGC GACGTTTACC TGCGCTGCCC GGACTGCGAT
GGCAAACGCT ACCGCCCCGA AATCCTGGAG ATCACGATTG AGCGCCCGCT GCGCATCAAA
TCCGCGGGGC CAGCCCCCAG CGTCAGACAC ATCAACGTCG CCGACGTGCT GAACCTGACC
GTCAGCGAAG CCGCTATGCT TTTTGAACAT GATCGCGAGG TAATACGGGG GCTGCAGCCC
ATTATTGATG TAGGTCTGGA ATACGTGAAG TTGGGCCAGC CGGTGCCCAC GCTCAGCGGT
GGCGAGGCGC AGCGTCTCAA GCTGGCCGGG TTTTTGGCCG ACGCTGCCAA AAGCGCGAGT
GCGAGCCGTC AGGCCATCGC CCGGCGCGGC ACCTTGTTCA TGTTCGATGA ACCCACCACC
GGCCTGCATT TCGACGACAT CGCCAAGCTG ATGCGCGCCT TGCGCAAACT GTTGGATGTG
GGGCATTCAT TGATCGTGAT CGAGCACAAC CTGGATGTCA TCCGGGCCTC GGATTGGCTG
ATTGACCTCG GGCCCGAAGG CGGCGATGCG GGCGGTGAAG TGGTGGCGTT TGGCACGCCG
GATGATGTGC GGCAGCATCC GGCTTCCCAT ACGGGCAAAG CCTTGCGCGA CTACGCTACG
GCGATGGGGG GCGTGCATGG GGTGAATGAA TTCACTGCGC CGTATTTGGT GCACGCTACG
GCGGCAGGGG TCACGCCGGG CGCCTCAGAC GCAGGCTCAA CATCGTTGCC CGGCGCAACC
CCCGCCGCCG CGGATCATGG TGTGCATGCG GCTGAAAACG CCATCCAGAT CATCAATGCG
CGTGAACACA ACCTCAAGTC CTTGAGCGTC AACATTCCAC GTGGCAAGTT CACGGTGGTG
ACCGGTGTGT CGGGTTCGGG CAAATCGACG CTGGCCTTCG ACATTCTCTT CAATGAGGGG
CAGCGCCGCT ATCTGGAGTC GCTCAATGCC TATGCGCGCT CCATCGTGCA GCCGGCGGGC
CGGCCGGAAG TGGACGCGGT CTATGGCATC CCGCCAACGG TGGCGATCGA GCAGCGGCTG
TCCCGGGGCG GGCGCAAATC GACCGTCGGC ACCACCACCG AGGTCTGGCA TTTCTTGCGC
CTGCTGTTTG TCAAGCTGGG CACGCAGCAC TGTATCCATG ACGGTACACC GGTGGCGCCG
CAAACGCCCG ACAGCATTGC CGCCCAACTG ATGAAAAACT TTCGCGGCCA GCACATCGGC
TTGCTTAGCC CCCTGGTGAT GAACCGCAAG GGTGTTTACA CCGAGCTGGC CGACTGGGCG
CGGCCGCGCG GCTTCACGCA CTTGCGGGTG GACGGCAACT TTTTGCCGAC CACGGCTTTC
CCGCGCATCG ACCGTTTCAA GGAGCACACG ATCGAGCTGC CGGTGGCCAG TCTGGACGTG
CTGCCGGAGC AAGAAGCCGC CTTGCGTGCG GCGCTGGCGC AAGCGCTGAT GCACGGCAAA
GGCGTGGTGC ATGTCTTGAG CAACTTGAGT GGCTTGCGTG CCGCCATGCT GGCGGGCACG
CCGACCGCGC AGATTGGCAC GTTGCAGGCT TTTTCCACCC TGCGCGCCTG CCCGGTGTGC
AGCACCAGTT ACGCCGAGCT GGACCCGCGC CTGTTCTCCT ACAACAGCAA GCACGGCTGG
TGCCCGGACT GCGTCGGCAC CGGTGTTCGC CTGACCAAAG AGCAGCGCAA GGTGTTCGAC
GACTCGGTGG TTGACAACGA TAACAAGGGG CGCGAGCAGA CCTTTGCCGA GCCCGAGGTG
GAGGATCTGG TGGATGCGGT GTGTCCAGCT TGCCAGGGTA CGCGGCTCAA TGCGACGGCA
CGGGCCGTGA AGTTCGGCCT GCAACTGGCA AGTCCTGCGA CCGCAAGCAT CCGTGCCAGG
CAGGCGATCG AGGGGGTGGC CATCACCGAA CTGGCTCGCC TGAGTGTTAC CGACCTGCGC
CAGTGGGTGG AGACGCTGCA GACCCAGGGC CGCATGAGCC AGCGCGAAAC CGACATTGCG
CGTGACCTGG TGCCCGAGAT CAAAGGTCGG CTTGAGTTTT TGGAGCAGGT GGGCCTGGGC
TATCTCACGC TGGACCGGGG CGCGCCCACG CTCAGCGGTG GCGAGGCGCA GCGCATCCGC
CTGGCCGCGC AACTCGGCAG CAACCTGCAG GGTGTGTGCT ACGTGCTCGA CGAGCCCACC
ATTGGCCTGC ACCCGCGCGA CAACCAGATC CTGCTGGGTG CGCTGCAAAG CCTGAGCGAC
CAGGGCAACA CGCTGGTGGT GGTGGAGCAC GATGAAGACA CCATCCGCTA CGCCGACCAC
ATCATCGACA TTGGCCCCAG CGCGGGCAAA CGCGGCGGGC AGTTGGTGGC CGAGGGTTCT
GTGGCCGACA TTCAGGGGGC TGCTGAGTCG CAAACGGGGC GCTATTTGCT GCACGCGATG
AAGCATCCGT TGAAGCCACG TCGGCCCGTG CTGATGCTCG CTGATGTGGG TGTTGGAATC
GGAACTGGCG CGGTACTCGC TGCGTCCAGA GCCGGTTCGC CGGGCGCCTC AGACGCAGGC
TCAACATCGT TGCCCGGCAA ACCGGCTCCA GCCGCGAAAC CGTTGACTCT TAGCGCGAAC
TTGAGTGTGG CCGCGTCGAA TGTGACGACC ACAGTGAATC TGGGGTCGAA TTCCATTTTC
ATCCCCGCTC CTCCGAAGAA GAAAAAAGCT GCTTCGAAAT TGGAATCTGA CCCCAATTTC
ACAACCCCCG AAGTGCAGCG CTGGCTGACG GTAACCAACG CCACCATGCA CAACCTGCAG
CACGTCACCG CCCAAGTCCC CTTGAGCCGA CTCGTCGCCA TCACCGGTGT CAGCGGCTCC
GGCAAATCGA CCCTGGCAAG AGACGTTTTG CTCGCCAACG TCCACACCGC CGTGCAAAAA
CGCAGCACCA AAGCCGGTCG CGACGCCTTG GACGCCGGCG AGCAAATCAG CTGGACCGGC
TGCACATCCG TCACCGGTTT CGAGTCGGTC GACCGCGTGC TCGAAGTCGA CCAGACCCCG
ATCGGCAAAA CCCCGCGTTC GTGCCCGGCC ACCTACATCG GCTTCTGGGA CATCATCCGC
AAGCTGTTCG CCGACACGCT GGAGGCCAAG GCACGCGGCT ACGCGGCCAA CCGCTTCAGC
TTCAACACCG GTGAGGGCCG CTGCGCCGGT TGTGAAGGGC AGGGCATCCG TACCATTGCC
ATGAGTTTTC TGCCGGATGT GAAGGTGTTG TGCGAAACCT GCAAGGGCGC GCGTTTCAAC
CCGGAGACCC TGGCCGTCAC CTGGCGCGGC AAGAACATTG GCGACGTGCT GCAAATGGAA
GTGGATGAAG CGGTGCAATT TTTCGCTGCC ATGCCCAATA TCAGCCACCC GCTGCAACTG
CTGAAAGACG TGGGGCTCGG TTATCTGACC CTGGGCCAAC CCTCGCCCAC CCTCAGCGGC
GGCGAGGCGC AACGCCTCAA GCTGGTGACC GAACTGAGCA AGGTGCGCGA CGACATCACG
CGGCGCGGTC AAAAAGCCCC GCACACCCTG TACGTGCTGG ATGAGCCCAC CGTCGGCTTG
CACATGGCGG ACGTGGAGAA ACTGATCAAG GTGCTGCACC GCCTGGTCGA TGGCGGCCAC
AGCGTGGTGG TGATCGAACA CGACCTGGAC GTGATTGCCG AGGCCGATTG GGTGATTGAC
CTGGGGCCCG ATGGCGGCAA CGCCGGTGGC CGCGTGGTGG CTGCGACGAC GCCGGAGGGT
GTGGTGACGC TGGGCACGCC CACCGGCGTG GCGCTGGCGG CGGTGCTGGC CCGGTAG
|
|---|
| Protein sequence | MPQGIIRIRG ARQHNLKNLD LDIRTGELTV VTGPSGSGKS SLVFDTLFAE GQRRYVETFS
AYARQFLDRM DKPAVDKVEG VPPAIAIDQT NPVRSSRSTV GTMTELNDHL KLLFARAGAL
FDRVTAQPVR HDSPETIYAQ LLERSAQANT RLAITFPVEL PASATPEEVA QWLSVSGFTK
VQAERDLEVE ASPAVGHKKP GKAAPEPASR RKVLDVVADR FRLAHAERAR VLEAIEVALK
HGSGRINVYV LNEPQAPDIQ GSLATDSIVN SVPEIWRFST GLHCPESNLR YTDPIASMFS
FNSAVGACDA CRGFGRVIGV DYGLVIPNDK LTLRAGAIKP MQTPAWQEAQ DDLMRHAEGA
GIPRDTPWYK LTPEQQHWVI DGSPNWNGKW NQHWFGIRRF FEYLETKSYK MHIRVLLSKY
RSYTPCPTCG GARLKTESLL WRMGSKADAD KVLDPAKRFM PAGVKWSREQ LEALPGLCLH
DLMLLPLDRV RRFFDSMQAR LGVSERAAPE TAGEPGLSVA VVTSEADAKT LKLLFEEIST
RLKYLCEVGI GYLTLDRQSR TLSGGEVQRI NLTTALGTSL VNTLFVLDEP SIGLHPRDMH
RIIVAMQRLR DAGNTLVVVE HDPAVMLAAD RMIDMGPGPG ERGGQIVFDG STADLRHADT
LTGAYLGGRK QVGLGFQRLV AANTPRLILE GAREHNLKNV GVEFPLQRLV CITGVSGSGK
STLIQDILAP ALKRHFGKPS EAPGAFERLL GAEQLSDVVF VDQSPIGKTA RSNPVSYVGA
WDAIREIFAN APLSRQRGYT ASKFSFNNGD GRCATCGGSG FEHVEMQFLS DVYLRCPDCD
GKRYRPEILE ITIERPLRIK SAGPAPSVRH INVADVLNLT VSEAAMLFEH DREVIRGLQP
IIDVGLEYVK LGQPVPTLSG GEAQRLKLAG FLADAAKSAS ASRQAIARRG TLFMFDEPTT
GLHFDDIAKL MRALRKLLDV GHSLIVIEHN LDVIRASDWL IDLGPEGGDA GGEVVAFGTP
DDVRQHPASH TGKALRDYAT AMGGVHGVNE FTAPYLVHAT AAGVTPGASD AGSTSLPGAT
PAAADHGVHA AENAIQIINA REHNLKSLSV NIPRGKFTVV TGVSGSGKST LAFDILFNEG
QRRYLESLNA YARSIVQPAG RPEVDAVYGI PPTVAIEQRL SRGGRKSTVG TTTEVWHFLR
LLFVKLGTQH CIHDGTPVAP QTPDSIAAQL MKNFRGQHIG LLSPLVMNRK GVYTELADWA
RPRGFTHLRV DGNFLPTTAF PRIDRFKEHT IELPVASLDV LPEQEAALRA ALAQALMHGK
GVVHVLSNLS GLRAAMLAGT PTAQIGTLQA FSTLRACPVC STSYAELDPR LFSYNSKHGW
CPDCVGTGVR LTKEQRKVFD DSVVDNDNKG REQTFAEPEV EDLVDAVCPA CQGTRLNATA
RAVKFGLQLA SPATASIRAR QAIEGVAITE LARLSVTDLR QWVETLQTQG RMSQRETDIA
RDLVPEIKGR LEFLEQVGLG YLTLDRGAPT LSGGEAQRIR LAAQLGSNLQ GVCYVLDEPT
IGLHPRDNQI LLGALQSLSD QGNTLVVVEH DEDTIRYADH IIDIGPSAGK RGGQLVAEGS
VADIQGAAES QTGRYLLHAM KHPLKPRRPV LMLADVGVGI GTGAVLAASR AGSPGASDAG
STSLPGKPAP AAKPLTLSAN LSVAASNVTT TVNLGSNSIF IPAPPKKKKA ASKLESDPNF
TTPEVQRWLT VTNATMHNLQ HVTAQVPLSR LVAITGVSGS GKSTLARDVL LANVHTAVQK
RSTKAGRDAL DAGEQISWTG CTSVTGFESV DRVLEVDQTP IGKTPRSCPA TYIGFWDIIR
KLFADTLEAK ARGYAANRFS FNTGEGRCAG CEGQGIRTIA MSFLPDVKVL CETCKGARFN
PETLAVTWRG KNIGDVLQME VDEAVQFFAA MPNISHPLQL LKDVGLGYLT LGQPSPTLSG
GEAQRLKLVT ELSKVRDDIT RRGQKAPHTL YVLDEPTVGL HMADVEKLIK VLHRLVDGGH
SVVVIEHDLD VIAEADWVID LGPDGGNAGG RVVAATTPEG VVTLGTPTGV ALAAVLAR
|
|---|
| |