| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3766 |
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| Symbol | |
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| ID | 3962399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 4202622 |
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| End bp | 4206122 |
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| Gene Length | 3501 bp |
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| Protein Length | 1166 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637918592 |
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| Product | hemolysin-type calcium-binding protein |
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| Protein accession | YP_524997 |
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| Protein GI | 89902526 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.234003 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCAAT TCGCCACTGT CGCTGCCATC ACCGGAAACG GCACTGTTTA TGCGGTAAAT
GCCCAGGGCA TCAGCCGCAC CCTCAAGGCG GGCGACAATT TGGAAAATGG CGAAACTGTG
CGCACCATAG GTGATGCCCG TGTCGAATTC GTGATGGAAG ACGGCCGCCT GCTGGCCGTT
GCCCCCGAAC AAACCGTGCG CCTGGACGAA AACGTGATCG AGTCCGATCA ACGTCCTACC
GCTCAAGACA GCGCCATAGT CACTCTAGGT GCCACTGCCG ATACTGTCAT TCAGGCGCTG
GAGCGCGGCA CCGACCTGAG CACAGAACTT GAGGCGACTG CGGCCGGTTT GGGAGTCGGC
GGTGGTGCTG ACGGCGGCAG CACGTTTGTG CAACTGCTGC GTGTTACGGA GGGCGTTGAC
TCGCAGTCTT ACGACTTCAG CTTTACGGCA TCTGACGTGC CTTCCAATTT GCCGGTGCAG
GCTGACATTG CACCTGCAAC ACTGTCGGCA GTCAACGACG CGCCGAGCAT CACGGTGGTG
GCGCAAGACT TCACGGAAAA CGCGGCCAAG ACAGGAGCGG TCGCGGCGAC GTACGCCACG
GCGGACGAAG AAGGCGACAC GCTGAAGGTG GACTTCAGCG CGGGCAGCAA CGCGGCGGGC
TACTACGCCC TGGCGGGCGG GCAAGTGGTG CTGACGGCCG CGGGTGCGGC GCAGGTCAAC
GCAGGCGGGG CGCTGCCGGC GATTGAACTG ACGGTGAGCG ACGCCACGCT GAGCGGCACG
GGCAGCGACA CACCGGTGGT GACGCTGGTC AACGACGCGC CGAGCATCAC GGTGGTGGCG
CAAGACTTCA CGGAAAACGC GGCCAAGACA GGAGCGGTCG CGGCGACGTA CGCCACGGCG
GACGAAGAAG GCGACACGCT GAAGGTGGAC TTCAGCGCGG GCAGCAACGC GGCGGGCTAC
TACGCCCTGG CGGGCGGGCA AGTGGTGCTG ACGGCCGCGG GTGCGGCGCA GGTCAACGCA
GGCGGGGCGC TGCCGGCGAT TGAACTGACG GTGAGCGACG CCACGCTGAG CGGCACGGGC
AGCGACACAC CGGTGGTGAC GCTGGTCAAC GACGCGCCGA GCATCACGGT GGTGGCGCAA
GACTTCACGG AAAACGCGGC CAAGACAGGA GCGGTCGCGG CGACGTACGC CACGGCGGAC
GAAGAAGGCG ACACGCTGAA GGTGGACTTC AGCGCGGGCA GCAACGCGGC GGGCTACTAC
GCCCTGGCGG GCGGGCAAGT GGTGCTGACG GCCGCGGGTG CGGCGCAGGT CAACGCAGGC
GGGGCGCTGC CGGCGATTGA ACTGACGGTG AGCGACGCCA CGCTGAGCGG CACGGGCAGC
GACACACCGG TGGTGACGCT GGTCAACGAC GCGCCGAGCA TCACGGTGGT GGCGCAAGAC
TTCACGGAAA ACGCGGCCAA GACAGGAGCG GTCGCGGCGA CGTACGCCAC GGCGGACGAA
GAAGGCGACA CGCTGAAGGT GGACTTCAGC GCGGGCAGCA ACGCGGCGGG CTACTACGCC
CTGGCGGGCG GGCAAGTGGT GCTGACGGCC GCGGGTGCGG CGCAGGTCAA CGCAGGCGGG
GCGCTGCCGG CGATTGAACT GACGGTGAGC GACGCCACGC TGAGCGGCAC GGGCAGCGAC
ACACCGGTGG TGACGCTGGT CAACGACGCG CCGATTGGCA ATGCCGATGC CTACAGCACA
ATTGAAGGGA GTATCAGCAC GACCTTGGGT AATGTATTAG CCAACGATCA AGATATTGAT
AGTCCTTCTA TTACGGTCGC GCAGTTCGCA TCATCCGCGT CTGCCAGTAA CACCGTGGTC
AGTGCCAATG GCAGCAATAT GATCACTACC GCGCTTGGCG GCATTGTAGT GATGAACAGC
GACGGTGCAT TTCGCTACAT CGCGCCGGTG GTGCAACACG ATTCGGAAAA TACGCCGGTC
AGTGATAGCT TCGTGTACCG CAGCACGGAT GGGTCTGCCG TTTCGGACTG GACGACAGTG
ACGGTCTCAC TCGGCGACAC CAGTCCGATA GCCAGTGCCG ACAACGCTAC CGTCGTCTTC
AATGGCTTAT TAACGGGCAA CCTGCTGGTC AATGACAGCG GCGTCGATGG ACCTTTGTCA
GTGACCAGTG TCACCTACAA CGGAACGACC AATACGATCG CCGCTGGTGG ACATACCTCG
TTCGTCACCC CGGACGGCAG GCTGATGGTC AATTCCGATG GCGCTTACAT TTTTTATTCG
AGCATTCCAC AAACCAAGGT GATTACTGGC AGCAGTCTTG CCACTTGGGA GGATTCCACC
GACTTGTACG GTTTTAATCA ATCTAGCACG GCCTGGAGAC AGAACGTCAG TGGCAGCACC
ACGACCCTGA ATATCGGCGC GTTGACGACT ACCCAGCAGG ACCTCGCTGC CTACGTCAAC
TCGGGTGCCA AGCCCGGCAT TGGTGTGCAA GGCCAGGGCA GCACCTTGGG CTCTGGCGAG
CAGTTGATCG TCAAGCTGCT TGAAACAACC ACAAGCGCGA CCGTCGGTAT CGCGCAGTTG
AATGCCGGTC AGTCGCCATC TCTGGCCAAA TGGGAGGCTT ACGATGCCAG CGGCAACCAC
CTGGCGGGCG GCACCTTCGA TGGCGCAACG GCCACCTCTA GTGGCTCCGA GTATGCCCTC
CAAATCGATT CCGAGACGCC CTTTACCTAC CTGCGTATTG AGTGGACTGG CAATTCACAA
GGTATTGTGC TGAGCTCACT CGACACGCTG CGAACCACCG ACAACCACAC GCAGACCTTC
AGCTACACCA TGAGCGATGC GGACGGAGAC TTCTCCAGTA GCACGCTGGC AGTGGCGTCG
GCGGCATCCG GCAGCACGCC TAATGCCAGC TTTGACGGCA CATCCGGCAA CGATAGCCAC
AGCGGCACAA CCGGTAACGA TACGATGCAG GGAAATGCTG GTGATGACGT GCTATATGGC
CATGCTGGCG ATGACAAGCT CAACGGTGGT GATGGCAATG ACATGCTCAG TGGCGGTGAT
GGCAACGACT TACTAATTGG CGGCGCTGGT CATGACGTTT TGATTGGCGG TTTAGGCTCG
GATACGTTCA AGTGGAGTTT CGGTGATCAA GGAACGGCCG CATCTCCCGC CGCTGATCAC
ATCATGGACT TCACGCCAGG TGTTGGTGGC GACGTTCTCG ATCTGAAAGA CTTGCTGGTA
GGCGAGCACG ACGGCAGCGG GGTGTCAGGT AACTTGGCTC AATTCCTGCA TTTCGCGAAT
GACGCGAGTG GCAAAGCGGT CTTGTCAATC GATCACAACG GCACTAGCGA TGGTGCGGCT
TTTGCTGCCG ATCAAACCAT CAAATTCGAC AATATGAGCA TGTCGGAATT GGCAACCGGG
CTCGGGTTGA CCGGCGGCGC AACTAGTGAT GACATCGTCG CGAAAATGCT CGTAAACGGA
CAACTCAAGA CCGACGTCTA A
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| Protein sequence | MAQFATVAAI TGNGTVYAVN AQGISRTLKA GDNLENGETV RTIGDARVEF VMEDGRLLAV
APEQTVRLDE NVIESDQRPT AQDSAIVTLG ATADTVIQAL ERGTDLSTEL EATAAGLGVG
GGADGGSTFV QLLRVTEGVD SQSYDFSFTA SDVPSNLPVQ ADIAPATLSA VNDAPSITVV
AQDFTENAAK TGAVAATYAT ADEEGDTLKV DFSAGSNAAG YYALAGGQVV LTAAGAAQVN
AGGALPAIEL TVSDATLSGT GSDTPVVTLV NDAPSITVVA QDFTENAAKT GAVAATYATA
DEEGDTLKVD FSAGSNAAGY YALAGGQVVL TAAGAAQVNA GGALPAIELT VSDATLSGTG
SDTPVVTLVN DAPSITVVAQ DFTENAAKTG AVAATYATAD EEGDTLKVDF SAGSNAAGYY
ALAGGQVVLT AAGAAQVNAG GALPAIELTV SDATLSGTGS DTPVVTLVND APSITVVAQD
FTENAAKTGA VAATYATADE EGDTLKVDFS AGSNAAGYYA LAGGQVVLTA AGAAQVNAGG
ALPAIELTVS DATLSGTGSD TPVVTLVNDA PIGNADAYST IEGSISTTLG NVLANDQDID
SPSITVAQFA SSASASNTVV SANGSNMITT ALGGIVVMNS DGAFRYIAPV VQHDSENTPV
SDSFVYRSTD GSAVSDWTTV TVSLGDTSPI ASADNATVVF NGLLTGNLLV NDSGVDGPLS
VTSVTYNGTT NTIAAGGHTS FVTPDGRLMV NSDGAYIFYS SIPQTKVITG SSLATWEDST
DLYGFNQSST AWRQNVSGST TTLNIGALTT TQQDLAAYVN SGAKPGIGVQ GQGSTLGSGE
QLIVKLLETT TSATVGIAQL NAGQSPSLAK WEAYDASGNH LAGGTFDGAT ATSSGSEYAL
QIDSETPFTY LRIEWTGNSQ GIVLSSLDTL RTTDNHTQTF SYTMSDADGD FSSSTLAVAS
AASGSTPNAS FDGTSGNDSH SGTTGNDTMQ GNAGDDVLYG HAGDDKLNGG DGNDMLSGGD
GNDLLIGGAG HDVLIGGLGS DTFKWSFGDQ GTAASPAADH IMDFTPGVGG DVLDLKDLLV
GEHDGSGVSG NLAQFLHFAN DASGKAVLSI DHNGTSDGAA FAADQTIKFD NMSMSELATG
LGLTGGATSD DIVAKMLVNG QLKTDV
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