| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3544 |
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| Symbol | |
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| ID | 3961136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 3941024 |
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| End bp | 3941938 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637918360 |
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| Product | RNA-binding S4 |
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| Protein accession | YP_524780 |
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| Protein GI | 89902309 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.824299 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGATT CAAAATCCCC TCCCCTCTTT CGCCGCGCGG CGCCTCCCAC GGCCCGCGCA
CCCATTCCAG CAGGCCAGAC CAACACCGCC GCCGTGGGCC CCAACGGAAC CTTGCGCCTG
AACAAACGCA TGGCCGAACT CGGCCTGGCA TCACGCCGCG AAGCCGATGA CTGGATTGCC
AAGGGCTGGG TCAAGGTCAA CGGCGTGGTG GCGACCATGG GCATGCAGGT GCTGCCCGAT
GTGCGCATTG AGATCGACAA ACAAGCCCAG GGCCAGCAAG CCAAGCAAGT GACGGTGCTG
GTGCACAAGC CGATCGGCCT CGTCAGCGGC CAGGCTGAAG ACGGTCACTT GCCCGCCATC
ACCCTGGTGC AGCCGCAAAA CCGCTGGGCG CAGGACAACG CCCGTTTCTT CTTCCACCCC
AGCCAGCTCA AAAGCCTGGT GCCCGCCGGG CGCCTTGACA TTGACTCGAC CGGGCTGCTG
GTGCTGACGC AAGACGGCCG GGTGGCGCGC CAATTGATCG GCGAAGACGC CGTCATGGAA
AAGGAATACC TGGTGCGGGT GGTTTACAAC GCTGATCAAG GCGCGGCCAC CAGCACCGGC
CAGCTCAGCC GCATTGACGA TGACGACCCC GTCAGCACCG ATGTGCAGTC GGTCTTTCCA
CGCGAGAAAC TCGCCTTGCT GCGCCACGGC CTGAGCCTGG ACGGACAGGC GCTTCAACCA
GCCAAGGTGG ACTGGCAAAA CCCCGAGCAG CTGCGTTTTA TCTTGACTGA GGGCAAGAAA
CGCCAGATTC GCCGCATGTG CGAGCTGGTG GGTCTGAAAG TGGTTGGCCT CAAGCGTGTG
CGCATTGGCA AGGTGATGCT GGGCAATCTG CCGCTGGGCC AGTGGCGCTA CCTGGCGCCA
CATGAGAAAT TCTGA
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| Protein sequence | MTDSKSPPLF RRAAPPTARA PIPAGQTNTA AVGPNGTLRL NKRMAELGLA SRREADDWIA
KGWVKVNGVV ATMGMQVLPD VRIEIDKQAQ GQQAKQVTVL VHKPIGLVSG QAEDGHLPAI
TLVQPQNRWA QDNARFFFHP SQLKSLVPAG RLDIDSTGLL VLTQDGRVAR QLIGEDAVME
KEYLVRVVYN ADQGAATSTG QLSRIDDDDP VSTDVQSVFP REKLALLRHG LSLDGQALQP
AKVDWQNPEQ LRFILTEGKK RQIRRMCELV GLKVVGLKRV RIGKVMLGNL PLGQWRYLAP
HEKF
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