Gene Rfer_3482 details

Gene Information

• Locus tag: Rfer_3482
• ID: 3962662
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 3873628
• End bp: 3874287
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637918299
• Product: tripartite ATP-independent periplasmic transporter DctQ
• Protein accession: YP_524719
• Protein GI: 89902248
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.318783
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTTC TTGATCGACT TGAGGAGACG TTCATCGCCT TCCTCATTGC CGGTGCCACG 
CTGGTTATTT TTGCAGCCGT GGTGCACCGC TTTGTTGCCT CCTGGAGCAT TCCCGTGGTT 
CAGGAACTGG CGCTTGCCAT CAACATGTCC TGGGCGCAGG AGCTGTGCAT CATCATGTTT 
GTCTGGATGG CCAAGTTTGG CGCGGCCTAC GGTGTGCGCA CCGGCATTCA CGTCGGGGTC 
GATGTGTTGA TCAACCAATT GGGCGAACGG AAGCGCCGAC GGTTTGTTCT ATTCGGGTTG 
CTCGCAGGTG CGCTGTTCAC CCTCATCGTC GCTGTGCTCG GGGTCCGCTT TGTCTGGGAA 
AACGGCGCGC ACTACGCCTT CATGAATACA TTGGGACAAG CTTCCGAAGG CATATTTCCC 
GGGCCGACGA CGCCTGATCT GGAGTGGCAA ACCTGGATCG TCTATTCGGC CGTTCCGCTG 
GGCACGGCCC TGATGTGCTT TCGGTTTTTG CAGGTGGCCT GGACTTTTGC CCGCACCGGC 
GAACTGCCGC ACCACGACCA TGGCCACGTA GACGGCTTGG ACGAACCCGA TGTCGAAGAC 
GAATTCCATC CGCATGACCT GCACACCTCG CGCCACGGCA ACGCCAAAGG GAACCCATAA 

 

Protein sequence

MKFLDRLEET FIAFLIAGAT LVIFAAVVHR FVASWSIPVV QELALAINMS WAQELCIIMF 
VWMAKFGAAY GVRTGIHVGV DVLINQLGER KRRRFVLFGL LAGALFTLIV AVLGVRFVWE 
NGAHYAFMNT LGQASEGIFP GPTTPDLEWQ TWIVYSAVPL GTALMCFRFL QVAWTFARTG 
ELPHHDHGHV DGLDEPDVED EFHPHDLHTS RHGNAKGNP