| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3457 |
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| Symbol | |
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| ID | 3962564 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 3848383 |
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| End bp | 3849171 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637918275 |
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| Product | RNA-binding S4 |
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| Protein accession | YP_524695 |
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| Protein GI | 89902224 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCACG CTAAAAAACC TGTTCCCCCA GCCCCGCGCG AGGGTGAGCG CCTGGCCAAG
CGCGTCGCTG AAATGGTGCC CTGCTCGCGC CGCGAGGCAG AACAGTACAT TGAAGGCGGC
TGGGTCAGCG TGAACGGGCA AGTGGTGGAA GAGCCCATGT TCCGGGTCTC TGACCAGCGG
GTCGAGGTCG ACCCCGACGC CAGCCTGCTG GAGCTCAGCG CCGTCACCCT GCTGCTGCAC
AAGCCGCCCG GGTTCGATGC CATGGCCGCG CCAGGCCAGG CCAATCGTCA CGTCAAATCG
GCGCAGCAAT TGCTCAGCGC CGCCACGCAC GCCACCGATG ACGCGTCGGG CGTGCGACTG
CTCAAGCGCC ACTTTGCCAA GCTCACGGCC TGCGTGCCGC TGGAGACCGC CGCCAGCGGC
CTGGTGGTGT TCACCCAGGA CTGGCGCGTG CTGCGCAAAC TCACCGAAGA CGCTCAATTG
ATGGAGCAGG AAGTGATTGT GGAGGTGGCG GGCGAGGTGC CAGCGCAGAG CCTGCAGCGC
ATCAACCAGG GGCTGGCGGT GGACGGCCAG CCCCTGCCAG CGGTCAAAGT CAGTCTCAAC
AGCACCGGCG AGACCTCATC GAAGCTGCGT TTTGCCCTCA AGGGCTCCCA CCCGGGCCTG
ATCGCCTACC TGTGCGAGCG TTTGGGGCTG CAGATTGTGA GCATGAAGCG CCTGCGCATC
GGGCGGGTAT CGATGACACA GTTGCCCCTG GGGCAATGGC GCTACCTGCA GGCGCATGAG
CGGTTCTAG
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| Protein sequence | MIHAKKPVPP APREGERLAK RVAEMVPCSR REAEQYIEGG WVSVNGQVVE EPMFRVSDQR
VEVDPDASLL ELSAVTLLLH KPPGFDAMAA PGQANRHVKS AQQLLSAATH ATDDASGVRL
LKRHFAKLTA CVPLETAASG LVVFTQDWRV LRKLTEDAQL MEQEVIVEVA GEVPAQSLQR
INQGLAVDGQ PLPAVKVSLN STGETSSKLR FALKGSHPGL IAYLCERLGL QIVSMKRLRI
GRVSMTQLPL GQWRYLQAHE RF
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