| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3396 |
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| Symbol | |
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| ID | 3962180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3778264 |
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| End bp | 3780909 |
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| Gene Length | 2646 bp |
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| Protein Length | 881 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637918216 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_524636 |
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| Protein GI | 89902165 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCCT TGCCAATCAA ACCAAGACAC CTGTTGCGGG CAAGCGTCTG TGCGCTGTTC
GCGACCAATA TGTCGCCGGC GTTGGCCCAG TCCGGCGCCG GGACCCATTC GACCTTGCCG
GCCCCGGATG ACAATGCCCA GACCGGTGTT CTGCGCGAAG TCGTCGTGGT CGGTGTGCGC
GCCAGCCTGG CCTCGGCCCA GGAGATCAAG CGCGACAAGC TCGAAATCGT CGACTCCATC
GTTGCCGATG ACATCACCAA GTTGCCGGAC TTCAGCGTCA CCGACGCGTT GCAGCGCGTG
ACCGGCCTGC AGATTGCCCG TGATCGCGGG GATGGCACCG GTATCTCCAT TCGCGGTCTC
ACGCAGATGG AGACGACGCT CAATGGCCGC GAAGTGTTCA CGGCCGGGGC CGGGCGCAAT
TTTGATTTCG CCGACATGGC GTCCGAGCTG GTATCCGGCA TCGACGTCTA CAAAACCTCC
TCTGCCGAGC ACATCGAGGG TGGGGTGGGC GGATTGATCG ATCTGCGCAC TCGCCGTCCC
TTTGATTTCA AAGGCCGTGA GATTGTTGGC TCAACCCGGC TGATCTACGG CGATCTGGCA
GACCGCAATG CAACGCAATT TTCTGTCCTG GCAAGCAATC GCTGGAAAAC GACCAGCGCC
GGGGAGTTCG GCGTGCTCGT GAATCTTGCG TACCAGGACC GCGCCTTTCG CGAGGATCAA
AAAGGCACCG GCAACCCACA AGCCCGCACC GATCTCATGG CGGGTCAGAC CGTCATCGCA
CCCAACGGAA CATCGGAAAC CATCAGTCTG GGCAATCGCA AACGCAGCAC CGCCCATGTG
GTGCTGCAGT GGCGCCCGGC GGCAGACCTG GAACTCTATG CCGAGGGCAG TTACACGGAA
TTTCAGACCC GCCAGAACTC CTGGCAAAGC AACGTCTTGG CGTCACCGGC GTTGGTGCCT
GGCAGCGCTG CCGTGTTTCC GGGCACGAAT GACGTGAGCC ACATCACCTG GATGAACGCG
CCGGTCTCGA TTCTGAGCTT CGCCCGTGAC ACGCTTGACC GGACGAAACA GGCCGCCGTG
GGCGGGGTTT GGAGCGGCAA GGCGCTCACG CTCAAGTCGG ATGTGAGCTA CACCCAAAGC
AGCAACACTC TCTTTTTCTC CGGCCTGACC TTGGGCGGCA CTGCCGCCAA CTTCACGCAA
GACCTGTCCA CCGATGTCCC CAGTTCGAGC ATCACCGGGA CAAATCTGCT GGACCCCGCC
AATTTGCAGT ACACGGGTAT CGCCTACCGT TTGCGGCGCT TCGAAGGCGA CCAGGCCACC
GTTCGGCTGG ATGGGGAATA CGAGGTTTCG GACAGCTTGG TCAATACGCT CCTGGCCGGG
GTGCGTTATG CCCGGCGTGG TGCCAGCAAT GCGTCCGGCC TGGTGGTTGC CGACGCCGGC
GTAGCAGGTA TTCCGGTCGC AGCCCTGCCG CAATATGCCA TGGTCAACCC TTATGATTTC
TACGCCGGCA CGGCCAGCAT CCGCAACACC CTGGTTGGCA ATCTGGATAC GGCCCGCGAT
GCCGTGGGAC TGCGCAACGC CTTTGGCATC ACCACGCCGA TCCCCGCCAC AGCGAGCCCG
CTGAGCCTGT GGGACATCAG CGAGGACACG CAGGCGGCGT ATCTCATGGC CCGGTTCACG
GCCACGGGCC TGCCGTTGAA GGGTCCGCTG GATGGCAACA TCGGCCTGCG CGTGGTCAGT
ACCCATGAGC GGGTCGCGGG CGCCCAGTCG GTGCCGGCCA CCGGCGCGGT GGTGCCCGTC
CATGTCGACA GCCGTTACAC CGACTACCTG CCCAGCGTGA ACCTGCGCTA CCTGCTCAGC
CCGGGGCTGT ATCTTCGTGC GGCGGCCTCC AGGACCCTGA CGCGACCGAA TTTCGACCAA
CTCTCACCTT CACTGACGCT GCTGCCAAAC GCCATCAACC CAGCGCTGAA TCAGGGTAGC
GCGGGCAATC CGGAACTCAA GCCGATCCGC GCCGACAATC TGGATCTGGC AGTGGAAAAA
TATTTCAACA AGAGCACGGC AGTTCACCTC ACCGGCTTCC TGAAGAAAGT TGAGGGTTTC
GTGACCACGG TGAGCAGCCC GGAAGTGGTG GACGGCGTCG CGTACCAAGT GAGCCGTCCG
CAAAACAGCG CCGCGGCCGA CATCAAGGGT TTCGAGCTTG GCTACCAGCA GTTCTACGAT
TTCCTGCCGT CCTGGCTGAG CGGCCTTGGC CTGCAGGCGA ACTACACCTA TGTCGACAGC
GAGACCCTCG ACCGCACCCT GGGTGAAAAG GTGGCGCTGC AAAATCTCTC CAGGCACAGC
GTCAACCTCA TTGGCATGTA CGAGAAGGGC AGGCTGTCAG CTCGCCTCGC CTACAACTGG
CGCGACAAAT TCTTGAGCGG TGTCACCAAC ATCGTGGGCG TCGGTGCACT GCCCATTTAC
ACCCGGGCCT ACGGCTGGCT TGACGCGTCG CTGAGCTATC GATTCAGCGA GAAAATCTCA
TTCGTGATCG CGGGCACGAA CTTGCTTGGC ACGAGGCGCA GTTCTTACTA CGGTGTGGAA
ACAAGACCTC AGAGTAGCTG GATCAACGAC ACGCAAGTCA GCCTTGCTGT GACCGCTCGA
TTCTGA
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| Protein sequence | MNALPIKPRH LLRASVCALF ATNMSPALAQ SGAGTHSTLP APDDNAQTGV LREVVVVGVR
ASLASAQEIK RDKLEIVDSI VADDITKLPD FSVTDALQRV TGLQIARDRG DGTGISIRGL
TQMETTLNGR EVFTAGAGRN FDFADMASEL VSGIDVYKTS SAEHIEGGVG GLIDLRTRRP
FDFKGREIVG STRLIYGDLA DRNATQFSVL ASNRWKTTSA GEFGVLVNLA YQDRAFREDQ
KGTGNPQART DLMAGQTVIA PNGTSETISL GNRKRSTAHV VLQWRPAADL ELYAEGSYTE
FQTRQNSWQS NVLASPALVP GSAAVFPGTN DVSHITWMNA PVSILSFARD TLDRTKQAAV
GGVWSGKALT LKSDVSYTQS SNTLFFSGLT LGGTAANFTQ DLSTDVPSSS ITGTNLLDPA
NLQYTGIAYR LRRFEGDQAT VRLDGEYEVS DSLVNTLLAG VRYARRGASN ASGLVVADAG
VAGIPVAALP QYAMVNPYDF YAGTASIRNT LVGNLDTARD AVGLRNAFGI TTPIPATASP
LSLWDISEDT QAAYLMARFT ATGLPLKGPL DGNIGLRVVS THERVAGAQS VPATGAVVPV
HVDSRYTDYL PSVNLRYLLS PGLYLRAAAS RTLTRPNFDQ LSPSLTLLPN AINPALNQGS
AGNPELKPIR ADNLDLAVEK YFNKSTAVHL TGFLKKVEGF VTTVSSPEVV DGVAYQVSRP
QNSAAADIKG FELGYQQFYD FLPSWLSGLG LQANYTYVDS ETLDRTLGEK VALQNLSRHS
VNLIGMYEKG RLSARLAYNW RDKFLSGVTN IVGVGALPIY TRAYGWLDAS LSYRFSEKIS
FVIAGTNLLG TRRSSYYGVE TRPQSSWIND TQVSLAVTAR F
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