| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3298 |
|---|
| Symbol | |
|---|
| ID | 3962883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3661846 |
|---|
| End bp | 3662763 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637918118 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_524538 |
|---|
| Protein GI | 89902067 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTGATCG TCGGCTGTGG CGATATCGGT CTGCGCGTGG CGCAAGCGCT GCCCGCCCGG
GTGCGGCTGC TGGCGCTCAC CTCCAGCGTG GAGCGCACCG CTGAACTGCG TCAGTGCGGC
ATCACGCCCT TAGCTGGCAA TCTGGATGCG CCCGCGTCGC TGCGCCGCCT GGGCGGACTG
GCGCATCGGG TGCTGCATCT GGCGCCGCCA CCCGATGAAG GCTGGACTGA TGCACGCAGC
CTGGCCTTGA CCCGTGCCTT GGGCCTGCGC AGTCGACCGG ATGCCCTGGT GTATGCCTCC
ACCAGCGGCG TGTATGGCGA CTGCCACGGT GAAGTTGCTA TTGAAACAAG AGCTACTCAT
GCAGACACAG CAAGGGCCAG GAGGAGAATT GATGCTGAGA ACACCATGCG CTTCTTTGGC
CGCGCCAGCG GCGTGCGCAG CAGCATTTTG CGCATTCCTG GCATCTACGC ACCCGACCGC
TTGAACGGCA CACCGCAGGC GCGGCTGATC AAAGGCACGC CGGTGCTGCA GGCCGCCGAT
GATGTCTATA CCAACCACAT CCATGCCGAC GATCTGGCCC GCGCCTGCGT GGCGGCGCTG
TGGCGCGCTC AAGCACAACG CATTTACAAC GTGAACGATG ACACCTGCCT CAAGATGGGC
GACTACTTTG ATCTGGCTGC CGACCTGTAT GGCTTGGCGC GCCCGCCGCG CGTACCCAGA
AGCACGGCCA GCGCGCACTT GTCCTTGATG CTGCTGAGCT TCATGAGTGA GTCGCGCCGC
ATGGACAACA CCCGTCTGAA GCGTGAATTG CGGCTGGCGT TGCGCTACCC GACGGTGGCC
GACGGTTTGC TGGCGCGGGC ACCGGGTGCC AATCCTGAAA ATCAACACAG CGCTTCGGCG
TCGCGAAAGG CAGCGTGA
|
|---|
| Protein sequence | MLIVGCGDIG LRVAQALPAR VRLLALTSSV ERTAELRQCG ITPLAGNLDA PASLRRLGGL
AHRVLHLAPP PDEGWTDARS LALTRALGLR SRPDALVYAS TSGVYGDCHG EVAIETRATH
ADTARARRRI DAENTMRFFG RASGVRSSIL RIPGIYAPDR LNGTPQARLI KGTPVLQAAD
DVYTNHIHAD DLARACVAAL WRAQAQRIYN VNDDTCLKMG DYFDLAADLY GLARPPRVPR
STASAHLSLM LLSFMSESRR MDNTRLKREL RLALRYPTVA DGLLARAPGA NPENQHSASA
SRKAA
|
|---|
| |