| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3270 |
|---|
| Symbol | |
|---|
| ID | 3960807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 3626809 |
|---|
| End bp | 3628584 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637918090 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_524510 |
|---|
| Protein GI | 89902039 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1894] NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
[COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCACTT TGCCCATTAC TGCACCCGGT CGGCCAATGG TCCTGGCGAC GCCGGATCAA
TTGCGCCGGA CGGCACAACG GGTGTCAAAG CTCAAAGGCC GACAGCCCGA CGATGTCTCG
CTGCAGGAAC TGCGCGCACT GATTGGCGTG CCACCGCCTG GCGGCCATCG CAGCGACCTG
TTGATCGAGC ACCTGCACCT GCTCAATGAT CACTACCGTG GTCTGTTCGA GCGCCATCTG
GTGGCGCTGG CCAGCGACAT GAAGCTGCCC ATGGCAGAGG TGTTCGAGGT GGCCACGTTC
TACCACCACT TCGAGGTGAT GCGCGACGGC CAGAGCCCTG CGGCGCTGAC CGTGCGGGTC
TGCGACAGCC TGAGCTGCGC GATGGCGCGG TCCGATGATT TGCTGGCGCG GCTGACGGGG
TTGCTGGGGG CGTCGGTGCG TGTGATGGCT GCACCGTGCC TGGGGCGCTG TGAGCAGGCG
CCGGCCGTGC TGGTGGGGCA ACGGGCGGTG CCGAATGCAA CGACGGCTTC GGTGCTTGAA
GCGGTCCAGG TGGCCTTGCC GGACAAGCCA GAATATATAC AAAATAGGAC TCTAGCCCCC
GCATTTACTG CACACTATGC TATTAATTTG ATATCGTTAG AAGCCTACCG GCAGCGCGCC
GGTTACGCGC TGGCGGCCGC CGTGGTGAAT GGTGAAGAGC CGGCGGAGGG CGTGATGGCG
GCCCTGGAGG ACGCGGGCCT GCGTGGCTTG GGTGGTGCCG GTTTTCCGGC CGGACGCAAA
TGGCGCATCG TGCGCGAGCA AAGCGCGCCG CGTGTCATGG CCGTCAACAT CGACGAAGGC
GAGCCCGGCA CCTTCAAAGA CCGCAGCTAC CTGGAACGCG ACCCGCATCG CTTTCTGGAG
GGCATGCTGA TCGCCGCCCA GGTGGCGGGC ACCGAGGCCT GCTACATCTA TCTGCGCGAC
GAATACCACG ACGCGCGCAA GATGTTGACG CAAGAGATCG AGGCCCTGCA GGCCGATCCG
CCCTGTCCGC TGCCCTACAT CGAACTGCGC CGTGGCGCGG GCGCGTATAT CTGCGGTGAA
GAGTCCGCCA TGATCGAGAG CATCGAAGGC AAACGCGGCC AGCCGCGCCT GCGCCCGCCC
TATGTCGCGC AGCTGGGCCT GTTTGGCAAA CCGACGCTGG TCCACAACTT TGAGACGCTC
TATTGGGTGC GTGACATCGT TGAAAAGGGC CCGCAGTGGT TCAGCAGTTT TGGCCGCCAC
GGGCGTCAAG GCTTGCGCTC CTTCAGCGTC AGCGGGCGCA TCAAGCTGCC CGGTGTCAAG
CTGGCGCCGG CCGGCATCAC GGTGCAGGAG CTGATTGACG AATACTGCGG CGGCATGCTG
GACGGGCACA CGCTTTACGC CTACCTGCCC GGCGGTGCGT CGGGCGGCAT TCTGCCGGCC
AGCCTGAACC ATATTCCGCT CGACTTCGAC ACCCTTCAGC CCTACGGCTG TTTCATTGGT
TCGGCCGCGG TGATTGTGCT CAGCCAATTC GACCGGGCGC GTGATGCGGC GCTCAGTGCC
ATGCGTTTTT TTGCCGCTGA GAGTTGTGGC CAGTGCACCC CGTGCCGGGT CGGCACCGCC
AAGGCCGTGC GTCTGATGGA AGCACCGGTG TGGGACAACG CCACGCTGGA GGACTTGAAC
GCGGTGATGG CAGAGGCGTC CATTTGCGGC CTGGGCCAGG CTGCGCCCAA TCCGGTGCGT
TGTGTGCAGA AATACTTTCC CCAGGAGATC GTTTGA
|
|---|
| Protein sequence | MPTLPITAPG RPMVLATPDQ LRRTAQRVSK LKGRQPDDVS LQELRALIGV PPPGGHRSDL
LIEHLHLLND HYRGLFERHL VALASDMKLP MAEVFEVATF YHHFEVMRDG QSPAALTVRV
CDSLSCAMAR SDDLLARLTG LLGASVRVMA APCLGRCEQA PAVLVGQRAV PNATTASVLE
AVQVALPDKP EYIQNRTLAP AFTAHYAINL ISLEAYRQRA GYALAAAVVN GEEPAEGVMA
ALEDAGLRGL GGAGFPAGRK WRIVREQSAP RVMAVNIDEG EPGTFKDRSY LERDPHRFLE
GMLIAAQVAG TEACYIYLRD EYHDARKMLT QEIEALQADP PCPLPYIELR RGAGAYICGE
ESAMIESIEG KRGQPRLRPP YVAQLGLFGK PTLVHNFETL YWVRDIVEKG PQWFSSFGRH
GRQGLRSFSV SGRIKLPGVK LAPAGITVQE LIDEYCGGML DGHTLYAYLP GGASGGILPA
SLNHIPLDFD TLQPYGCFIG SAAVIVLSQF DRARDAALSA MRFFAAESCG QCTPCRVGTA
KAVRLMEAPV WDNATLEDLN AVMAEASICG LGQAAPNPVR CVQKYFPQEI V
|
|---|
| |