| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3241 |
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| Symbol | |
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| ID | 3960588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 3591633 |
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| End bp | 3593351 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637918061 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_524481 |
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| Protein GI | 89902010 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0207551 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTTATG GCATCGGTTT CAAGCTGGGG CTTTTGCTGG CCAGTTTCAG TCTGGTGGCG
ATGGGAATCG TCGGTTACTA CTCGTACGCC AGTGGCCGTG CCACCTTGCT GGCGGCCGCG
CAACGTGATT TGCTGACGGC GACCCACGTG CTGGGGCGCA ACTTTCAGGC CAGCATCGAC
GCAGTGGCCA GGGATACCTT GCTGCTGGCA AGCCTCCCGG CAAGCTCTGC CATGGTCACT
AGCCCTGAGA GCATGCCAGC GGGCCGTGAC CCAAAGGGGT TGAGCGATAC CTTCGCGGCG
ATGATGGCGG CGCATCCTGA ATATTTCCAG ATTCGACTGA TTGGTGCTGA CCAGCACGGC
CTGGAACTGG TTCGGTTGGA CCGAGACGAC GGCAAACTGG TGCCGGTACA AGCAGACAAT
CTGCAGGAAA AAGCCCATTA CCCCTATGTT TTCAACACCT TGCAACTGGG CAGGGGGCAA
GTCTATTTGT CGGACATCAC GATCAACCAC GAAGAAGGGG CGCATTCCGG GTTGCACAAG
CCCACCGTCC GGGTCGCCTC ACCCGTGTTG GACGACAGCG GGAAAGTGCT GGGGCTGATC
GTGATCAACG TGGATCTGAA CGGCCTGTTT GACCGCCTGA AGTCCGATCT GCCAAGCGCC
TACCAGTTGT ACCTGAGCAA CCATTGGGGC GACTTTCTGA TTCACCCCAA CCCGGCCGAA
GCCTTTGGCT TTGACCAGGG ACGCAGAATC TTTATTCAGG AGTCTTTCGA GCCGGTTGCG
GCCTTGATTA ACGGCACGAG CGCCAGTGTG GTTACCAATA TTGACGCCGT TCAGCAAGCT
GGCAACGGGC TGGTGGCCGC TTTTATCCGC ATGCCTTTTG GTGGCTCGGT CCAGACGGAT
TTTGTGATTC TGGGACTGTC GCAGCCGCTG GAGAACGTCG TGCGGGAAAC GTCGAAGCTG
GGTTGGAACA CCGTTCAAAT TATTCTTGTG CTGGGGGTTC TTGCCATACT TCTGGCGGCG
CTGGTTTCGC GCGCCGTGAT CGGCCCCCTG CGGAAAATGG TTGATGCGAT GAGTGCCTTT
TCAAAAGAGC ATGTGGTCAA CGAATTGTCG GCCGCCCGCA AGGACGAAAT CGGGCTGCTC
GCCAGCAGCC TCAACGACAT GCAGAACATC ATTGTGGCGA ACATGCGCGA TTTGAAAGAG
AGTCGGCAAG CGCTTGAGCA TCTGGCCCAA CATGATTCAC TGACCGGTTT GCCCAACCGC
GCACTGTTTG ACGACCGGCT GCGTCAAGCG GTCTCACAAG CGCGGCGCGA CAAGACGCGC
ATGGCCCTGC TGTTTGTTGA TCTGGACGCG TTCAAGGACA TCAACGACAC TTGCGGCCAT
CACGTTGGGG ACTTGCTGCT GAACGCCGCT GCGAAACGGA TGCAGGCCTG TGTGCGCCAT
GCCGATACGG TGGGGCGCAT GGGGGGTGAC GAGTTTGTCG TGCTGCTGAC CCATGTCGAG
GAGGACCAGG ATGCCGTGCT GGTCGCTGAA AAAATATGCA AGGCCCTCAG TCAGCCTTTT
GATCTTGATG GCCGCAGTTT GTTGATTGGG TCCAGCATCG GTGTGGCCCT CTACCCAGAA
CATGGTAGTG ACGAGCTGAC GCTGTCGCGC AGTGCCGATG CCGCCATGTA CCTTGCCAAA
GAGAGCGGTG GCAACTGCGT CAGTCTTTTC GGGTCTTGA
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| Protein sequence | MRYGIGFKLG LLLASFSLVA MGIVGYYSYA SGRATLLAAA QRDLLTATHV LGRNFQASID
AVARDTLLLA SLPASSAMVT SPESMPAGRD PKGLSDTFAA MMAAHPEYFQ IRLIGADQHG
LELVRLDRDD GKLVPVQADN LQEKAHYPYV FNTLQLGRGQ VYLSDITINH EEGAHSGLHK
PTVRVASPVL DDSGKVLGLI VINVDLNGLF DRLKSDLPSA YQLYLSNHWG DFLIHPNPAE
AFGFDQGRRI FIQESFEPVA ALINGTSASV VTNIDAVQQA GNGLVAAFIR MPFGGSVQTD
FVILGLSQPL ENVVRETSKL GWNTVQIILV LGVLAILLAA LVSRAVIGPL RKMVDAMSAF
SKEHVVNELS AARKDEIGLL ASSLNDMQNI IVANMRDLKE SRQALEHLAQ HDSLTGLPNR
ALFDDRLRQA VSQARRDKTR MALLFVDLDA FKDINDTCGH HVGDLLLNAA AKRMQACVRH
ADTVGRMGGD EFVVLLTHVE EDQDAVLVAE KICKALSQPF DLDGRSLLIG SSIGVALYPE
HGSDELTLSR SADAAMYLAK ESGGNCVSLF GS
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