| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3070 |
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| Symbol | |
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| ID | 3962634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 3394443 |
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| End bp | 3396623 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637917890 |
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| Product | sigma 28 |
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| Protein accession | YP_524311 |
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| Protein GI | 89901840 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.2717 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGGCAT ACAGTCCACC CGTGCCAGAC TCCGAAAAGA CCCAACATGA TGGCGTGGAC
GGCGGAGTCT TTGATTTCGC AGGCTGGGAA GCAGAGGTAG AACCACCGCT TCCCAAAGGC
GACCCTACGC TAGCTGAGGC GGCCCGTGAA CTGCAAAGCA CAATCTCCAA ACACCAGCCC
ATCGACAAAT CCACCGATTG GGAAGACTTT GAGGCATACC TACCCGAGCG GGCGTCTCCC
CTGCCAGGCG CAAACGACGC TGATGCGCGC GAACGGCTTC GCCTCGTCCT TCTTCGCGCC
ATCCGGGAAG GCAGCGTACC GGACGCTTCA ATCGAGGACC TTTCGCTAGG CGACGACGGC
ATTCCCAACG TGGAGGCCTG CTCCCTCTTG CGCATGGTGA TCAATGACGT TGGCGCCGAG
ACCGACGATC GATTCGAATA TTGCACCCCG GACGAAAGCT TTGAGGTGGT CGTCGCGCCG
GAAATGACCC CAGACGAAGA GGACACGGTC ACCGAGGCGC TGGCTTTCAT AGACAACTTG
GCGGAGCGAC GCAATGATCC CCTGCGCATC TATCAAAAGG AGTTTCAGAA TGCCACACTG
CTCACCGCTG ATGAAGAAGT CGCCCTGGGA CAAGGCATGG AACGCGGCGT ACAACAAGCG
CTCGATGCCC TGGCGGTGTG GCCCTCTGGC ATTGGCGCCG TGTTGGATGC CGTTCACATG
GTCAAATCCG AGGCAAAACC GCTGCGTTGG CTGTCCTCTG GTCCGCGAGC CGAGCTGCAA
GACATTGAAA TTTCATCAAA TGCAGAACCT GCTGCTGATT CTGTTTTGTC GGTGGAGGGA
ATCGGCACAG ACGACGAAAG CGACTCCCAG TTTGGTCATG ACGCGCACGA ATCAACCGAC
GAACTGTCCG AGCTCCTTTC CAATGCTGAG CTCTTGTCGG GACTCGATTT CGACGGGGCT
CTAAGCAGCG ATGGTTGGAA CTCGAGGCGA AAAGCACTCG CATCGCTTGG CTTATCCCGA
GGTTTCCTGC TTGAATTGGC GGACTTTGAA CAGCTCGAAG TGCAAGAATC CGCGATTGAA
TTTTCGCAGG CGATGCAGGC ATATCGGCAA GCCCGCGATC AAATGGTCAT CGCCAACTTG
AAACTCGTGC TGTTCATTGC AAAGAAATAC CTATATAGCG GGCAACCATT GGACGATCTG
CTCCAGGAGG GGAACATCGG ACTTATCAAG GCTGTTGACC GCTACGACTG GCGCAGGGGC
TTCAAGCTCT CTACCTATGC CACGTGGTGG ATTCGCCAAC AGGTTGGCCG CTACGTCGCC
GATAAAAGCA AAACGATCCG CCTGCCAGTC CACGTATACG TGAAGACCCA GCAGATCGCA
CACGCCGCCC ATGCCATTGA ACTGGCGACT GGGCGCATGC CTACGATCGA AGAAATTGCG
AAAAAGATGG AAATGCCTGC GAGCAAGGTG GCGCCTCTCG CCCTCGCAAT CCCTGAGCCG
CTGCCGATAC ACGACGTAGA TGTGGACAGT CTCATCGCCA TTGACGCGCA AGACAACTAC
GTCGCCAGAG ACCCCATGGA CATCGTGTCC GACAGTCAGT TGATTGGCTC CATCGACCGA
TTTTTGGCAA CGCTAAAACC CAAGGATGAA CAAGTTTTGC GCTTGCGTTT TGGCATCGGA
GCGCATGAGG CCATGACGTT GGAGGAAATC GGCACCCGCC TAGAGGTTAC GCGGGAACGC
ATTCGCCAAA TCGAGGCGAA GGCCATATGT CATTTGAAAC ACCCTGCCCG CTTGGAACGC
CTTTTGCGCG ACCTCAACGG CACCCCACCG CCAAAGCGCG AAGAGATCGA AACTGAATCG
ATCGAATCCG ACGACGCAAC GGACAGCAAG CCACCTTCGA CACCAGTCAG TTCTTCGGCA
GCAAGACTGC AGCCAGTCAC CCAGTCCGCA AAAGCGGTTC CACGTCCAGA GCGCATTCAG
TCCACCGTGC CGACGATTCT CGACAAAGTT TTGGCCATGG CCGCGGTTCT CGGGTTTACC
GTGGAAGACG AGCGCGATGG CAAATCCGGG AGAGTGTGGG TCAACATTCT CGAAACCCCG
AACATTCACT CCCGCAAACT GGTTCGAAAA ATGCTGGACT TGGGATTTGA ATTCTGGCCA
GGGAAAGGTT ATTGGAGATG A
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| Protein sequence | MGAYSPPVPD SEKTQHDGVD GGVFDFAGWE AEVEPPLPKG DPTLAEAARE LQSTISKHQP
IDKSTDWEDF EAYLPERASP LPGANDADAR ERLRLVLLRA IREGSVPDAS IEDLSLGDDG
IPNVEACSLL RMVINDVGAE TDDRFEYCTP DESFEVVVAP EMTPDEEDTV TEALAFIDNL
AERRNDPLRI YQKEFQNATL LTADEEVALG QGMERGVQQA LDALAVWPSG IGAVLDAVHM
VKSEAKPLRW LSSGPRAELQ DIEISSNAEP AADSVLSVEG IGTDDESDSQ FGHDAHESTD
ELSELLSNAE LLSGLDFDGA LSSDGWNSRR KALASLGLSR GFLLELADFE QLEVQESAIE
FSQAMQAYRQ ARDQMVIANL KLVLFIAKKY LYSGQPLDDL LQEGNIGLIK AVDRYDWRRG
FKLSTYATWW IRQQVGRYVA DKSKTIRLPV HVYVKTQQIA HAAHAIELAT GRMPTIEEIA
KKMEMPASKV APLALAIPEP LPIHDVDVDS LIAIDAQDNY VARDPMDIVS DSQLIGSIDR
FLATLKPKDE QVLRLRFGIG AHEAMTLEEI GTRLEVTRER IRQIEAKAIC HLKHPARLER
LLRDLNGTPP PKREEIETES IESDDATDSK PPSTPVSSSA ARLQPVTQSA KAVPRPERIQ
STVPTILDKV LAMAAVLGFT VEDERDGKSG RVWVNILETP NIHSRKLVRK MLDLGFEFWP
GKGYWR
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