Gene Rfer_3040 details

Gene Information

• Locus tag: Rfer_3040
• ID: 3961016
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: +
• Start bp: 3357208
• End bp: 3363876
• Gene Length: 6669 bp
• Protein Length: 2222 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637917861
• Product: DNA helicase related protein
• Protein accession: YP_524282
• Protein GI: 89901811
• COG category: [L] Replication, recombination and repair
• COG ID: [COG1112] Superfamily I DNA and RNA helicases and helicase subunits

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAAGGG AGTCAAGTCA ATCGACAGAG GCTGGTACGC CTGAAAATTC TGCTGTTTCC 
GAGGTGCCGC CGCCAATAGT TCGATTGCAG ATAAGCGCCG CAAAAAAGCT GAACCTCGCA 
GCCTTTCAGA ACGCGGTACC CGCGTTGCTT GAGCTGGCCG TGGTCAACGA CACGGCATCC 
CAGCTTACCG AGTTGACGAT CCATCTGACT TCGGAGCCCG CGTTCGTGAA ACCACGAACG 
TGGAATCTCG ATGCCGTCGG CCCTGGGGAA AGCTATCACC TGCCTGATCT GGATGTCCGG 
CTAGACGGTG CATTGTTCTC GCGTTTGACC GAAGCCGAAC CGGCGGTACT CCGGTTCGAA 
CTCAGAAGTG CCATGCAACC AGACCTTGTG TTGGCCGCGC ACGAATCGAA TGTCGAACTG 
CTGGCTCGCA ATCAATGGGG AGGAATCGGC AGACTGCCCG AAATGGTTGC GGCCTTCGTA 
CAGCCCAATG ACCCGGCCGT GGATCGCCTG CTGAAGGGGG CGGCCTTGTC TTTGCAGGCG 
GCCGACAAGT CGGGATCGAT TGACGGCTAC ACCCATGGCC CCAAGCGGGC CTGGGAACTG 
ACATCGGCGA TTTGGGCTGC GGTGCTCCAG CGCAAGCTCA ACTACTCGCT GCCGCCCGCC 
AGCTTCGAGC ACACCGGGCA AAAGGTCCGC AGCCCCAGTC AAATTATGGA CTCCGGCATT 
GCCACCTGTT TCGACTCCAC GCTGCTGTTT GCCGCGTGCC TTGAACAAGC GAACCTGAAC 
CCCCTGCTTG TCTTCACCAA GGGTCATTCC TTTGTTGGTT TCTGGTTACG CAACGAGGAG 
TTCTCAACAG CCGTCGTGGA CGACATCACA GCGCTGCGCA AGCGCCTCAA ACTGCAGGAG 
TTGGTCGTTT TCGAAACCAC CCTTGCAACT CAAGGACAAC CGGTCAATTT CAGCCAAGCT 
ATTGACAACG CCAACCGCCA ACTTGCGGAA GAGGAAGAGG ACAAGTTCGA GCTGGTTATT 
GACGTGAAGC GCGCCCGCAT GTCGCGCATC AAACCGCTCG CCCAGGCCCA GGCTGTTGCG 
GACGTGGTTC CTCACACATT GGAGCCTGAG ACAACGATCA CGATCGAAGA AGCACCTGAT 
CTGCCCGACG AGGTTGTGAT CGACACGCCC ACCGCCGAGC TTGACCCCAA GGACCGACTG 
GCGCGGTGGC AACGCAAACT GCTTGATCTC TCTCTGCGAA ACGCGCTGCT GAATTTCAAG 
CAGGGAAAGA AAGCCTTGCT GCTGGACGTG GCTGCTCCAT CGCTCGAAGA CACCCTGGCG 
GAAGGGCACA CGATCAAACT TCTGCCCAGT CCAGAACTGA TGCAGGGCCA GGACCCTCGA 
AGCCAGCAAC TGCACGAAGC CCGAAGCCTT GAAGACCTGC GCAAGACGCA CGCGGCCGAT 
GCGCTCCAAC GCCGCGAGGT GTTCATCCGG CTGGAGCAAC AGGAACTGGA AAGCCGCCTG 
GTCGAGCTGT ACCGAGGCGC CCGCAACGCG ATGCAGGAAG GCGGGGCCAA CACACTCTTC 
GTCGCATTGG GCTTCCTGGT CTGGAGCCGA TCCGACAAGC CGGAACACCG TGTCAAAGCG 
CCTTTGATCC TGCTGCCCAT CACGCTGAAC CGCAAAAGCG CTCGCTCGGG GTTCACGCTG 
CAGGCGCATG AAGACGAAGC GCTGTTCAAT CCAACGCTGG TCGAGATGCT GCGGCAAGAC 
TTCCAGCTGG AGCTGGGTAT TCCCGCTGGT GACCTCCCGC GTGATGAGTC CGGCCTGGAC 
ATCGCTGGCA TCTGGAAGCG CGTGCGCAGC GTCATCAAAG ACATCCGGGG TTGGGAAGTC 
AGCGAAGACG TCGTGTTGTC GATGTTCTCC TTTGCCAAGT ACCTGATGTG GAAGGACTTG 
GCTGATCGCA CCGACGATTT GCGCAAGTCG CCGGTGGTGG CGCACCTGAT CGACACGCCG 
CGCGAGCCCT ATCCGTCGAC AACGCCCTTC CCCGACGCGC GCAGATTGGA CACCGACTAC 
GCGCCACAAC AGGTCTTCTG CCCTCTCCCC GCTGACTCAT CCCAGCTTTC TGCCGTCATG 
GCCGCGGCCA ATGGCAAAGA CTTCGTGTTG ATCGGACCAC CGGGTACCGG CAAGAGTCAG 
ACCATTGCCA ACCTGATTGC ACAGTGCCTG GCTGAAGGCA AGCGCGTACT TTTTGTTGCC 
GAAAAGATCG CTGCGCTAGA TGTGGTCTTC CGCCGTCTGC GTGAAGTGGG CCTCGGGGAG 
TTCTGCCTCG AACTGCATTC GAACAAGAGC CGCAAGCTCG ACGTGTTGAG CCAGCTCCAA 
AAGTCCTGGG AATCCAAGGG TGAAGTGGAC GCTGCCACCT GGGAAGCCAA GGCCCGGAAA 
CTGGGGCAGG TGCGCGAACA ACTGTCGACC TATGTTGAGC GCCTTCACCA ACGCCATGGC 
AACGGTTGGA CGATCTACAA AGCCATCGGG TGCGTCGTCG GTGGCGATGC GTTGCCCGAC 
CTGCGATTCA GCTGGGCCAC TCCCCGGGCG CACGATGAAG TTGCCCTGAC CGCGCTACGC 
AATCTCGCGG GCCGGTTGCA AGCCAACGCT GCGGCGGTCG GTCCTGAGCA GCTGTTGACT 
GGCGCCCTGG TACCGGTGCA CGTCACCGAT TGGTCCGCCA AGTGGCAGCA GGAGATGGTC 
AGGTCCGCTC AAACGCTGCA GACCACCAGC CATGGCTTCC TGGCTGCAGC GCAAGACCTG 
GGTCAAATGA TCGGCATGGA ATGGCCTGCG CTGCACAGGC AGACCCGGTC CTCCATCGGC 
GTGCTCGCCA AGGTCTTGCC GCAGGCATCG ACCCAGGACT GGAGCTTCTG CGCTCTGCCG 
GACAGCGACA CCGTGTGCGC GGCGCTGAAG GCCGGTAACG ACCTACTCGG TCAACACCGC 
GTGCTCTCTT CGAAGATGTC CACCCCGTGG CCGACCGAGC TGCAGACTCG CCTGGCCCAG 
GCGCTCGACT TGCTCGACAA GCGCCGCAAC CTGTACACGG AACTCGGATC GCCATGGCCC 
CCCACCGTCA GCGACGAGAT CGAGCGCGGA GTGCAGTGGA TCGAAGAGAT GGGCCAACTG 
CGCGCAAGCC TCTCCGTCAA GTACGGTGCT GGTGTGGGGC AGCTCAACGT GGCGCAGCTG 
CAGCGCGATT GGGCGAAAGC CGACAAGTCG TTCTGGCCGA TGTCCTGGTT GGGCAAGCGC 
AAAGTGCGTG GGGTGCTGGA GGCGGTCATC GAAGGCACTG GCGAGCCACG TGTTGCCGAT 
GATCTGTCCG CGCTCGTGCG CATCAGGAGC CTGCGCGAAG AAGTCCAGCA ACTGAACCCC 
GGCGCTGCCG CCGAAGGGCT GTGGGTAGGT GTCAAGACGC GAACCGATCA CGCCAGCAGC 
GCCTTGAAGG CCAACGCCGC GCTGCACGCT GCGCGAATGC ACAAACCCTT TTCGCTGGAG 
GGCCTGGAAG GCGCGAGTGA GGGCTATTGC GGCGAACGCT GGACTCGCGA GGCGCAACGC 
CTGAAAGCCT TGTTGGACCT GGATCACCGC CTGTCCGAGT GCGCACCGCT TTCGGAAAGC 
AGCCAAGGAC TTTGGCAAGG TCACGACACC GGCAGCGCGA TACTTCGGGC CGCGCTGGCG 
TTTGAGCGCG AACGCCTGGG CTTGCCACAG CGGGGCTCGC TGCAAACACC GCACCCGAAT 
GTGGCTGAAG GGCGATGCGG CCCCGCCTTG CAGCAACAGC ATGCGCTCTT GCAGACGCGC 
GGCGCGGTCG AAACCCGGCT GCTGTCCATG AGCGGCCTGG CCGCCGAATG CCCCGGTGTC 
TGGAATGCAC TGGATACCGA CCGCGAAGGC ATCGAGCGCG CGCTGAAGTT CCACGCGTCT 
CTGAAGGCTG GCCTGTCGGG CCTCGGGCTG GAGCCCTCTT CCATTGTGGA GGCGCGGCAA 
AGCCTGCATC AGGTGCTGGG CACCCGCCGC GCAGAACTGA GCGACACGGC CTTGATCGGC 
CAGGCCTGTC ACCAGGTGCT GGCGCAGTTG GCAGAGATCA ACGCGGCGAC AGATCAGTTT 
TGCCAGACCG CCACGCAGCC AGAGAACGTG CACCGCGCAT TCGCCGACCT TGCGCCAGCC 
GAGTTGGCCG AAGCGGCTGT GCGGCTGGAG GGCGGTCACC TTGGCTTGCA CGCGTGGTGC 
GCCTGGCGCC ACGCACAGAC CGACGCACGC GATGCAGGCC TTCCCGCGCT GGTGAGCGCC 
ATCGAGGCGG GTGACCTGAC CCCGGCGCAG GTGCCCACCG CATTTGAGGT GAACTACGCC 
CGCTGGTGGC TGGCCGAAGC GGTGGACGAG GACGAGGTGC TCAAGCGGTT TGTCTCAGCA 
GAGCACGAAC TTCGCATCAA AGAGTTCCGC GCCCTCGATG ACGAGTTCAC CAAAGTCTCC 
CGCGAGTGGA TCCGGGCCAA GCTGTGTGCC AACCTGCCGG CAACCGACAG CATCCAGCGC 
AACAGCGAGT GGGGCATCCT GCGCCACGAG ATCACCAAGA AGAAACAGCA CAAGCCGCTG 
CGCCAACTGC TGCAAGAGAT CCCCTCGGTC GTGCTGCGGC TGACCCCGTG TCTGCTGATG 
AGTCCGCTGT CGATCGCGCA GTACCTCTCG GCCGAGGCCA GCAACTTTGA CCTGGTGGTG 
TTTGACGAGG CCTCGCAAAT CCCGGTGTGG GACGCCATCG GCGCCATGGC ACGCGGCAAG 
CAGGTGGTGA TGGTGGGCGA CCCCAAACAA CTGCCACCCA CCAACTTCTT CGGCCGCAGC 
GACAGCACCG ACGGTGACGA CGACGTCGTG GAAGGCGACC TGGAAAGCAT CCTCGACGAG 
TGCCTGGGTG CCAGCCTGCC CACGCGCAAC CTGTCGTGGC ACTACCGCTC ACGCCACGAA 
AGCCTGATCG CCTTCAGCAA CCACCGCTAT TACGGGGGTG GTCTGGTCAC CTTCCCGTCG 
CCCGTCACCG ACGACCGCGC CGTCAGCTTC CACCTGGGGA AGGGGTGCTA TGAAAAAGGC 
GGCGCCCGCA TCAACCAACC GGAAGCCAAA GCCCTTGTGG TTGACTTGGT GAGCCGGCTC 
AAGCGCCCGG GCTTCCGGGA GTCGGGCCTG ACCATCGGCG TGGTGACCTT CAACTCGGAG 
CAGCAGGGCC TGATTGAAGA CTTGCTCGAC GAGGCGCGCC GCAAAGACCC TGGCCTGGAA 
CCCTATTTTT CCGAAATGGA GCTCGAACCG GTGTTCGTGA AAAACCTGGA GAGCGTGCAA 
GGTGACGAGC GCGACATCAT GTACTTCTCC ATCACCTACG GGCCGGACAT GGCCGGTGCC 
GTGTCGATGA ACTTCGGCCC GCTGAACCGC GACGGCGGCG AGCGGCGCCT GAATGTGGCC 
GTGACCCGCG CCCGGCACGA ACTGCGCGTG TTCTCCAGTC TGCGTGGCGA GCAAATGGAC 
CTGTCGCGCA CCAAGGCGGC TGGCGTTCGG GACCTGAAGC ACTTCCTGGA GTTTGCAGAA 
TTCGGGCCGC GCGCACTGGC CGAAGCACAC CACGGCAGCC AAGGCGACTT CGAAAGCCCC 
TTCGAAGCCA GCGTGGCCAC AGCGCTGGGC CGAAAAGGCT GGCAGGTGCA CACCCAGATC 
GGCGCATCGT CGTTCCGCCT AGACCTGGGC GTGGTGCACC CCGACTTTGC AGGCAGGTAT 
CTGGCGGGAG TGGAATGCGA CGGCGCCACC TACCACCGAT CCGCCACCGC GCGTGACCGG 
GACAAACTGC GCGAGCAGGT GCTGCGCGGC CTGGGCTGGG AGATCGTGCG CATCTGGTCC 
ACCGACTGGT GGGTGAACCC AGGAGGCACG CTGGAGCGCG TGCATGCCGC GCTGACCGAA 
CTGCTCGAAA AGGACCGGGA GCGGCGCGCC AACGAAGCCG AGGTACCGCC CGACGAAGCG 
TTGTCCGAGC CGAGTGACGA CGAAGCAACA CCCAGTCTCC ATGCGATCAA CGAGGCCGAA 
GCAGCCATCA CGCGTGCGGC AGCAGGCCTG CCCCCGGCAG CTGTCGAACC CCACCAGGAG 
ACAGCGGATG CACCAACCGA AGCGGTCTAC GCCCGGTCGG CATCCACGCC GTCAACGCCT 
GTTCTTGGGG GCGCCGACAC GCAAAGGGAT CGTCGCTTCC AGGCATCACA GCCCACCGAC 
GCGGTGCCAC CCGGCGCCAT CTCTACCGAC CTGTTCTACG AACCCACATA CGACGCGGTG 
TTGCAGCCGA TGGTGGAGTG GGTCGTGCAA CGTGAGGGAC CGGTGCTGGA TGCGGTGCTG 
GCGCGGCGCA TCGCCCGGGC ACATGGCTTC CAGCGGACGG GAAGCCGGAT TCAGGAACGG 
GTGGAGCAGA GCGCGCGGCG GCTCTTCAAG ACCACAGAGG AGGCAGGTGA CACGTTCTAC 
TGGCCTCGTG AAGTGGAACC TTGCAGCGAG GTAGCTTTCC GATGGCCAAC AGACGATGAC 
AGCACTCGAG GCGTTGAAGA AATCTGCGAA GCGGAGTTGT TGTCACTGGC TCGGCTGGTG 
CTGCGGCGGG GACACTCTGG GCAAGAAGCG TTGATCGCTA TGGCTCGCGA GCTTGGCCTA 
CAAAGATTGC GCGAGGCAAG CCGTGACCGA CTTGAAGGTG TCCTCTTGAA GGGCTGCGAA 
TCAAAATGA 

 

Protein sequence

MTRESSQSTE AGTPENSAVS EVPPPIVRLQ ISAAKKLNLA AFQNAVPALL ELAVVNDTAS 
QLTELTIHLT SEPAFVKPRT WNLDAVGPGE SYHLPDLDVR LDGALFSRLT EAEPAVLRFE 
LRSAMQPDLV LAAHESNVEL LARNQWGGIG RLPEMVAAFV QPNDPAVDRL LKGAALSLQA 
ADKSGSIDGY THGPKRAWEL TSAIWAAVLQ RKLNYSLPPA SFEHTGQKVR SPSQIMDSGI 
ATCFDSTLLF AACLEQANLN PLLVFTKGHS FVGFWLRNEE FSTAVVDDIT ALRKRLKLQE 
LVVFETTLAT QGQPVNFSQA IDNANRQLAE EEEDKFELVI DVKRARMSRI KPLAQAQAVA 
DVVPHTLEPE TTITIEEAPD LPDEVVIDTP TAELDPKDRL ARWQRKLLDL SLRNALLNFK 
QGKKALLLDV AAPSLEDTLA EGHTIKLLPS PELMQGQDPR SQQLHEARSL EDLRKTHAAD 
ALQRREVFIR LEQQELESRL VELYRGARNA MQEGGANTLF VALGFLVWSR SDKPEHRVKA 
PLILLPITLN RKSARSGFTL QAHEDEALFN PTLVEMLRQD FQLELGIPAG DLPRDESGLD 
IAGIWKRVRS VIKDIRGWEV SEDVVLSMFS FAKYLMWKDL ADRTDDLRKS PVVAHLIDTP 
REPYPSTTPF PDARRLDTDY APQQVFCPLP ADSSQLSAVM AAANGKDFVL IGPPGTGKSQ 
TIANLIAQCL AEGKRVLFVA EKIAALDVVF RRLREVGLGE FCLELHSNKS RKLDVLSQLQ 
KSWESKGEVD AATWEAKARK LGQVREQLST YVERLHQRHG NGWTIYKAIG CVVGGDALPD 
LRFSWATPRA HDEVALTALR NLAGRLQANA AAVGPEQLLT GALVPVHVTD WSAKWQQEMV 
RSAQTLQTTS HGFLAAAQDL GQMIGMEWPA LHRQTRSSIG VLAKVLPQAS TQDWSFCALP 
DSDTVCAALK AGNDLLGQHR VLSSKMSTPW PTELQTRLAQ ALDLLDKRRN LYTELGSPWP 
PTVSDEIERG VQWIEEMGQL RASLSVKYGA GVGQLNVAQL QRDWAKADKS FWPMSWLGKR 
KVRGVLEAVI EGTGEPRVAD DLSALVRIRS LREEVQQLNP GAAAEGLWVG VKTRTDHASS 
ALKANAALHA ARMHKPFSLE GLEGASEGYC GERWTREAQR LKALLDLDHR LSECAPLSES 
SQGLWQGHDT GSAILRAALA FERERLGLPQ RGSLQTPHPN VAEGRCGPAL QQQHALLQTR 
GAVETRLLSM SGLAAECPGV WNALDTDREG IERALKFHAS LKAGLSGLGL EPSSIVEARQ 
SLHQVLGTRR AELSDTALIG QACHQVLAQL AEINAATDQF CQTATQPENV HRAFADLAPA 
ELAEAAVRLE GGHLGLHAWC AWRHAQTDAR DAGLPALVSA IEAGDLTPAQ VPTAFEVNYA 
RWWLAEAVDE DEVLKRFVSA EHELRIKEFR ALDDEFTKVS REWIRAKLCA NLPATDSIQR 
NSEWGILRHE ITKKKQHKPL RQLLQEIPSV VLRLTPCLLM SPLSIAQYLS AEASNFDLVV 
FDEASQIPVW DAIGAMARGK QVVMVGDPKQ LPPTNFFGRS DSTDGDDDVV EGDLESILDE 
CLGASLPTRN LSWHYRSRHE SLIAFSNHRY YGGGLVTFPS PVTDDRAVSF HLGKGCYEKG 
GARINQPEAK ALVVDLVSRL KRPGFRESGL TIGVVTFNSE QQGLIEDLLD EARRKDPGLE 
PYFSEMELEP VFVKNLESVQ GDERDIMYFS ITYGPDMAGA VSMNFGPLNR DGGERRLNVA 
VTRARHELRV FSSLRGEQMD LSRTKAAGVR DLKHFLEFAE FGPRALAEAH HGSQGDFESP 
FEASVATALG RKGWQVHTQI GASSFRLDLG VVHPDFAGRY LAGVECDGAT YHRSATARDR 
DKLREQVLRG LGWEIVRIWS TDWWVNPGGT LERVHAALTE LLEKDRERRA NEAEVPPDEA 
LSEPSDDEAT PSLHAINEAE AAITRAAAGL PPAAVEPHQE TADAPTEAVY ARSASTPSTP 
VLGGADTQRD RRFQASQPTD AVPPGAISTD LFYEPTYDAV LQPMVEWVVQ REGPVLDAVL 
ARRIARAHGF QRTGSRIQER VEQSARRLFK TTEEAGDTFY WPREVEPCSE VAFRWPTDDD 
STRGVEEICE AELLSLARLV LRRGHSGQEA LIAMARELGL QRLREASRDR LEGVLLKGCE 
SK