| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_3003 |
|---|
| Symbol | |
|---|
| ID | 3960348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 3311254 |
|---|
| End bp | 3311829 |
|---|
| Gene Length | 576 bp |
|---|
| Protein Length | 191 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637917823 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_524245 |
|---|
| Protein GI | 89901774 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain
[TIGR01926] uncharacterized peroxidase-related enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAC CACGCTACCC CATGCCAGAA CTCAAAGACC TGCCTGAAGA CATTCGCGTC
AAAGTGCTGG AGGTGCAGGA AAAAGCCGGC TTTGTGCCCA ACGTCTTTCT GGCGCTGGCG
CGCCGGCCGG CCGAGTGGCG CGCCTTTTTT GCCTACCACG ACGCCTTGAT GCTCAAAGAC
TCGGGCCTCA CCAAGGGCGA CCGCGAGATG ATCGTCACCA CCACCAGCGC CGCCAACAAG
TGCCTGTATT GCGTGGTCGC GCACGGTGCC ATCCTGCGCA TCTACGAGAA AAAGCCCTTG
GTGGCCGACC AGGTGGCGGT GAACTACCGC AAGGCCGACA TCACGCCGCG CCAGCGCGCC
ATGCTGGACT TTGCAATGAA GGTCTGCCTG CATTCCGACG AGCTTGGCGA GGCTGATTTT
GCCGCCCTGC AGGCGCACGG CTTCAGTGAT GAAGATGCCT GGGATATTGC CGCCATCACT
GCTTTCTTTG GTCTCTCCAA CCGCATGGCG TCGTTCAGCA ACATGCTGCC CAACCCCGAG
TTCTATGCCA TGGGGCGTAC CCCGAAGACC AAGTGA
|
|---|
| Protein sequence | MNTPRYPMPE LKDLPEDIRV KVLEVQEKAG FVPNVFLALA RRPAEWRAFF AYHDALMLKD
SGLTKGDREM IVTTTSAANK CLYCVVAHGA ILRIYEKKPL VADQVAVNYR KADITPRQRA
MLDFAMKVCL HSDELGEADF AALQAHGFSD EDAWDIAAIT AFFGLSNRMA SFSNMLPNPE
FYAMGRTPKT K
|
|---|
| |