| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2600 |
|---|
| Symbol | |
|---|
| ID | 3962596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 2862942 |
|---|
| End bp | 2864072 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637917418 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_523847 |
|---|
| Protein GI | 89901376 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCCT GGTTGAAATG GGCGCTGGCC GCCCTGGTGG TCGTTCTGCT GATCACCAGC
GTGTGGCGTG CCTTGTCGCA GCGCAAGACG CAACAAGAAA CGGTGGCAAC CCAGGCGGCT
CAGCGCACGC AAACTGTGGT CGAACTGGGC AGCGCCGATC TGGTCCCAGT CAGACTTCTT
GAATTGGCGC AGGGACTCGC AATTTCGGGC GCGATCAAGG CCGTCAACAG CGCCGTCGTC
AAAGCCCGGG TTCCGGGTGA ATTGCAGGGC CTCACCGTAC GCGAGGGTGA GCGCGTCAAG
GCCGGGCAAG TCATCGCACG CATCGATGCC AGGGAATACC AGTCGCGCGT GCTCCAGGCA
CAGCAACTTG CCGCAGCCGC CAAGGCCCAG ATCGACATTG CCCGGCGCAA CTTTGACAAC
AACCGCTCGC TGGTAGAACA AGGTTTTATT TCCAAAACGG CGCTTGACAC TTCGATGGCC
AGCCTTGCCG CTGCCGAGGC CACGTACCAG GCGGCCCAAG CGAGCACCGA GATCGCCGCC
AAATCAATCG AAGACACCGT GCTGCGTGCG CCCATCAGCG GACTGGTTTC ACAGCGACTG
GCGCAGAACG GCGAGCGCAT CGCGGTCGAA GCCCGCATCG TGGAAATTGT CGATCTCGAC
CACCTGGAAC TCGAAGCCAG TCTGAGCGCC GCCGAATCGC TGGACGTCAG GATTGGCCAA
AGTGCCGTGC TCCAAATCGA AGGCGCAGCC AAGCCGGTCA CGGCCCAAGT GGTGCGCATC
AACCCGAGCG CCGTTGCCGG CAGTCGCGCC GTGCTGGTCT ATTTGGCCGT GGACGCCACG
CCCGGCCTGC GCCAGGGCTT GTTTGCACAG GGCACCCTGG GCACCGGCCA CCTGCAAACG
CTGGCGCTGC CTTTGAGCGC CGTGCGCACC GACAAACCGC AAGCCTATGT GCAGGTGGTG
AGCAACAACA AGGTGAGCCA CCAGAACGTC CAACTCGGTG CGCGCGGTGA GGTCAACGGC
CAAACCATGG TCGCCATCAA GGGACTGAGC GAGGGTGCCA CTGTCATCAT CGGCTCAATC
GGCACGCTGC GCGAAGGCAG TACCGTGAAA ATCATCCAGA GCGGCAAATA G
|
|---|
| Protein sequence | MKSWLKWALA ALVVVLLITS VWRALSQRKT QQETVATQAA QRTQTVVELG SADLVPVRLL
ELAQGLAISG AIKAVNSAVV KARVPGELQG LTVREGERVK AGQVIARIDA REYQSRVLQA
QQLAAAAKAQ IDIARRNFDN NRSLVEQGFI SKTALDTSMA SLAAAEATYQ AAQASTEIAA
KSIEDTVLRA PISGLVSQRL AQNGERIAVE ARIVEIVDLD HLELEASLSA AESLDVRIGQ
SAVLQIEGAA KPVTAQVVRI NPSAVAGSRA VLVYLAVDAT PGLRQGLFAQ GTLGTGHLQT
LALPLSAVRT DKPQAYVQVV SNNKVSHQNV QLGARGEVNG QTMVAIKGLS EGATVIIGSI
GTLREGSTVK IIQSGK
|
|---|
| |